Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4486g00002 ATGGAGAAGAGATATGAGAAGTTAGTGAGGTTTTCCAGTGATGAAGGTAAACAAAGTCTTGAACTTCCTTGGGAAAAGCTAGACTCTCAGAAACACCATGAGAAGGCATTCACAGTGTATCCAGAATGCAAAATGAGTATTGGTGACAAGAACAGAATGAGTATCAAAATTCCCGCGCTTGCAAAGTTTAAGGTTTTCCCAGAAAACCATGAGCCATGGAAGAAGAAAATTCTTGATCCTGGCAGTGATGTAATTTTGGAGTGGAACAGGGCATTCCTGTTTTCTTGCATTCTGGCACTGTTTGTTGATCCGCTGTTTTTCTACCTTCCCTCAGTGGCAAATGATGGGAAATCGTCGTGTATGGCTACTGATTTGAATATAGGAATTGTTGTGACATGTTTCCGAACATTTGCTGATGTTTTCTATCTGCTCAACATGGCCATCAAGTTCAGAACTGCCTATGTATCACCGAGTTCTAGGGTGTTTGGAAGGGGTGAGCTTGTTATGGATCCTAGGCTTATTGCAAGGCGATATTTGAGATCAGAGTTCTTCCTAGATCTTGTTGCTACATTACCTCTTCCCCAGATTGTGATTTGGTTTATCATGCCAGCAATCAGAAGCTCCCATGCTGATCACACCAACAATGCACTTGTACTCATTGTTCTGCTTCAATATGTCCCCAGATTATATTTGATCTTCCCATTAAGTTCTCAGATTATTAAAGCCACTGGAGTAGTTACAAAGACAGCTTGGGCTGGGGCTGCTTACAATCTTTTACTTTACATGCTAGCTAGTCATGTGTTGGGGGCATCATGGTATCTGTTATCAATTGAAAGGCATGCTACTTGCTGGAAATCTGAATGCAGAAATGAAAGCCTCCCTGTAAAATGTGCTCTTAAGTACTTAGACTGCAGCACTTTAAACCAGGATGATCGCATGAAGTGGGTAAACAATACTTCTGTGTTTGGTAACTGCAATCCTGAAAATACCACCAATTTCTACTACGGAATTTTTGCAAGTGCAGTGGAAAATAATGTTATCTCCTCTGTGTTTATAGAGAAGTATCTCTATTGTCTGTGGTGGGGTTTGCAGAACTTAAGTTCCTATGGCCAGGGTTTGACCACAAGCACATTCATTGGGGAAACTGCATTTGCAATAGTCATGGCTATTCTGGGTCTGGTTTTGTTTGCGCACTTAATTGGTAACATGCAGACCTATTTGCAATCTATTACTGTGAGGCTTGAAGAATGGAGGCTCAAGCGACGTGACACTGAAGAGTGGATGAGCCACCGTCAGCTCCCACAAAATCTGAGAGAGCGTGTCAGAAGATTTGTTCAATACAAGTGGCTTGCAACTCGCGGGGTTGATGAAGAAACAATCCTACGTGGCCTGCCTATTGACCTACGTAGAGATATCCAACGCCACCTTTGCTTGGACCTTGTTCGACGTGTTCCTTTTTTCTCACAAATGGATGATCAGCTACTTGATGCAATATGCGAGAGATTGGTATCATCATTGAGTACTCAAGGCACGTACATAGTTAGAGAAGGAGACCCGGTTACAGAGATGCTCTTTATCATCAGAGGGAGACTTGAAAGTTCAACCACAAATGGAGGCAGAACTGGTTTCTTCAACTCCATTACCTTGAGGCCTGGTGATTTCTGTGGAGAAGAGCTACTTGCTTGGGCATTGCTTCCAAAATCCACTCTCAACTTGCCTTCTTCTACAAGAACTGTTAAAGCCCTTGTAGAAGTTGAAGCATTTGCCCTAAGAGCGGAAGATCTTAAATTCGTGGCCAATCAGTTTAGACGTCTCCACAGCAAGAAGTTGCAGCACACTTTCCGTTTCTACTCTCACCATTGGAGGACATGGGCAACATGCTTCATTCAGGCTGCTTGGCGCCGGTTCAAGAAGAGAATGTTTGCCAAGAGCCTAAGCTTGAGGGAATCCGAGTCCTTCAATCACTATCAACATAATGAAGAAGAGCACAGTGCAGTGACTTCAAACACTGCACAAGTAAAACAAAACCTAGGTGTCACTATACTGGCTTCAAGGTTTGCTGCAAACACAAGGAGAGGAGTTCAGAAGATGAAGGATGTAGAGCTGCCCAAGTTGCAAAAGCCTGAAGAACCAGACTTTTCAGTAGAGCCTGATGATGATTAG 2163 0.4309 MEKRYEKLVRFSSDEGKQSLELPWEKLDSQKHHEKAFTVYPECKMSIGDKNRMSIKIPALAKFKVFPENHEPWKKKILDPGSDVILEWNRAFLFSCILALFVDPLFFYLPSVANDGKSSCMATDLNIGIVVTCFRTFADVFYLLNMAIKFRTAYVSPSSRVFGRGELVMDPRLIARRYLRSEFFLDLVATLPLPQIVIWFIMPAIRSSHADHTNNALVLIVLLQYVPRLYLIFPLSSQIIKATGVVTKTAWAGAAYNLLLYMLASHVLGASWYLLSIERHATCWKSECRNESLPVKCALKYLDCSTLNQDDRMKWVNNTSVFGNCNPENTTNFYYGIFASAVENNVISSVFIEKYLYCLWWGLQNLSSYGQGLTTSTFIGETAFAIVMAILGLVLFAHLIGNMQTYLQSITVRLEEWRLKRRDTEEWMSHRQLPQNLRERVRRFVQYKWLATRGVDEETILRGLPIDLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLSTQGTYIVREGDPVTEMLFIIRGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLPKSTLNLPSSTRTVKALVEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWATCFIQAAWRRFKKRMFAKSLSLRESESFNHYQHNEEEHSAVTSNTAQVKQNLGVTILASRFAANTRRGVQKMKDVELPKLQKPEEPDFSVEPDDD 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4486g00002 720 Gene3D Jelly Rolls 484 604 IPR014710 -
Vium4486g00002 720 SUPERFAMILY Voltage-gated potassium channels 82 408 - -
Vium4486g00002 720 FunFam Cyclic nucleotide-gated ion channel 1 413 477 - -
Vium4486g00002 720 Pfam Ion transport protein 88 413 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vium4486g00002 720 MobiDBLite consensus disorder prediction 697 720 - -
Vium4486g00002 720 SMART cnmp_10 486 617 IPR000595 -
Vium4486g00002 720 Pfam Cyclic nucleotide-binding domain 509 597 IPR000595 -
Vium4486g00002 720 CDD CAP_ED 486 617 IPR000595 -
Vium4486g00002 720 SUPERFAMILY cAMP-binding domain-like 416 608 IPR018490 -
Vium4486g00002 720 Gene3D - 118 412 - -
Vium4486g00002 720 Gene3D Helix hairpin bin 414 477 - -
Vium4486g00002 720 MobiDBLite consensus disorder prediction 697 712 - -
Vium4486g00002 720 FunFam Cyclic nucleotide-gated ion channel 1 484 602 - -
Vium4486g00002 720 ProSiteProfiles cAMP/cGMP binding motif profile. 486 569 IPR000595 -
Vium4486g00002 720 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 69 713 - -
Vium4486g00002 720 PRINTS EAG/ELK/ERG potassium channel family signature 355 372 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium4486g00002 720 PRINTS EAG/ELK/ERG potassium channel family signature 381 392 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium4486g00002 720 PRINTS EAG/ELK/ERG potassium channel family signature 399 408 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium4486g00002 720 PRINTS EAG/ELK/ERG potassium channel family signature 449 456 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium4486g00002 720 PRINTS EAG/ELK/ERG potassium channel family signature 146 155 IPR003938 GO:0005249|GO:0006813|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4486g00002 Vium-Chr4486 22841 27020 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4486g00002 10 716 Ion Channels AT2G24610 70.799 0.0 1052
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4486g00002 K05391 - gmx:100803334 1340.1