Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4485g00012 ATGGCGTTGACTTCAGAATATTTTTCACTCTTTCTTCTCCTACTCCTGTCTGTTCTGTTTATCTTCCTCCTCCGTCGCAAAACCGCAGCCAGAAACCGCCGTCTTCCGCCGGGACCACCGGGATGGCCCATATTCGGAAACATGTTTCAGCTCGGAGACAGGCCTCACCGCACCCTCACCGAACTAAGGGCCAAACACGGCCCCGTCGTGTGGCTCCAAATCGGCGCCATTAACACCATGACTATTCTCTCAGCCAATGCTGCCACCGTGTTCTTCAAGAATCACGACCACGCATTCGCAGACCGCACCATAACCGAAACCATGCGAGTCCACAACTACGACAAATCCTCCTTGGCCTTAGCCCCATACGGCCCCTACTGGCGCCTCATGCGGCGCCTCGTCACCGTGGACATGCTGGTGGCGAAACGCTTAAACGAAACCGCTCCAGTGCGGCGGAAGTGCGTAAACAACATGATAACATGGTTGAGCAAAGAGGCTGAGAAGTTGGAAGAGGGTGGCGGAGTCCACGTGGCGCGGTTCGTGTTCCTGATGTCGTTCAATCTCTTAGGGAACCTGATGCTGTCGCGGGACCTGTTCGACCCTGACTCGGAAGACGGGTCGGAGTTTTTCACTGCGATGATGGGTTTGATGGAGTGGTCAGGTCACGCTAACGTCGCCGACATGTTCCCGTGGTTGAGGCGGCTGGACCCGCAAGGTTTGAGGAGGAAGATGGATCGAGACATGGGCAAAGCTCTGGAAATCGCGTCGAAGTTCGTGAAAAAGCGTTTGGACGAGAAGAACTCCGATGAAAAAACAAGGGACTTCTTGGATGTGTTGATTGACTTTCAAAGCAGCAACAGTGAAGAAGCACTCAATATTTCAGACAAAGACCTCAACATTTTCATTTTGGAAATATTCTTGGCTGGGTCAGAAACAACAAGCAGCACAATTGAATGGACGATGATGGAGCTTCTGCGCCACCCGGAGTGGCTGGAGAAGGTGAAAAGCGAGCTTGATCGGGTGGTCGGGCGTGGAAGAAAAGTTGAAGAGAGTGACATAGACAACCTTCCTTACCTACAAGCCGTGATTAAGGAAACACTTCGATTGCACCCTCCCATTCCGTTGCTTGTTCCTCGGAAGGCTACGAAGAACACAAAGTTCATGGGATACGACATTCCGAAAGACACCCAGGTTTTGGTGAATGCCTGGGCAATAGGGAGAGACCCCAGTGTCTGGGAGCAACCCCTTGAGTTCAAACCCCAACGGTTTGTCGATGATTGCAAGAACCTTGATTACAAGGGAACTAATTTTGGGTTGATTCCTTTTGGAAGTGGACGAAGAATGTGTGCAGGTTTGCCCCTAGCGCACAGAATTCTTCATCTTGTGTTGGGATCGTTGCTTCACGAATTTGACTGGAAACTTCCGAGTCATGTCACACCCTCCACCTTGGATACCAGGGAAAGGCTCGGTATCACCATGCGAAAGCTTCAACCTTTGCTTGCTGTGCCTAAATTAATTTCCTCTTCCTCTTCCATCATTAATGATTAA 1548 0.509 MALTSEYFSLFLLLLLSVLFIFLLRRKTAARNRRLPPGPPGWPIFGNMFQLGDRPHRTLTELRAKHGPVVWLQIGAINTMTILSANAATVFFKNHDHAFADRTITETMRVHNYDKSSLALAPYGPYWRLMRRLVTVDMLVAKRLNETAPVRRKCVNNMITWLSKEAEKLEEGGGVHVARFVFLMSFNLLGNLMLSRDLFDPDSEDGSEFFTAMMGLMEWSGHANVADMFPWLRRLDPQGLRRKMDRDMGKALEIASKFVKKRLDEKNSDEKTRDFLDVLIDFQSSNSEEALNISDKDLNIFILEIFLAGSETTSSTIEWTMMELLRHPEWLEKVKSELDRVVGRGRKVEESDIDNLPYLQAVIKETLRLHPPIPLLVPRKATKNTKFMGYDIPKDTQVLVNAWAIGRDPSVWEQPLEFKPQRFVDDCKNLDYKGTNFGLIPFGSGRRMCAGLPLAHRILHLVLGSLLHEFDWKLPSHVTPSTLDTRERLGITMRKLQPLLAVPKLISSSSSIIND 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4485g00012 515 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 442 451 IPR017972 GO:0005506|GO:0016705
Vium4485g00012 515 Gene3D Cytochrome P450 21 501 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4485g00012 515 PRINTS P450 superfamily signature 440 449 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4485g00012 515 PRINTS P450 superfamily signature 361 372 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4485g00012 515 PRINTS P450 superfamily signature 308 325 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4485g00012 515 PRINTS P450 superfamily signature 449 460 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4485g00012 515 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 10 504 - -
Vium4485g00012 515 CDD CYP76-like 65 503 - -
Vium4485g00012 515 Pfam Cytochrome P450 36 495 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4485g00012 515 SUPERFAMILY Cytochrome P450 36 502 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4485g00012 515 PRINTS E-class P450 group I signature 317 343 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4485g00012 515 PRINTS E-class P450 group I signature 401 425 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4485g00012 515 PRINTS E-class P450 group I signature 439 449 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4485g00012 515 PRINTS E-class P450 group I signature 449 472 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4485g00012 515 PRINTS E-class P450 group I signature 63 82 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4485g00012 515 PRINTS E-class P450 group I signature 297 314 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4485g00012 515 PRINTS E-class P450 group I signature 360 378 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4485g00012 515 FunFam Cytochrome P450 76C4 27 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4485g00012 Vium-Chr4485 94978 96733 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4485g00012 3 503 Cytochrome P450 AT3G52970 45.833 6.95e-152 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4485g00012 K22983 - gmx:100785241 796.964