Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4478g00009 ATGGAATCTACCAAGTTCAATTTGCTCTTCTTTTACGTAATTTTTCTTGCAATACTCCCCACCCTTAAGGCTAACATAGGTCACATGGACCATGTCTGGCATAGGCGAATGAAGGAAGCAAGGGAAGCAGCAAAAAAGGCATACAAGCCAAACCCCATGAAAGTTACCGCTGAATTCAATACACAAGTCATGAGAGCGTTGAAAGGCTCCAACAGCACGAGAAGGGACTTGAAGAGCAATAGTAAATGCACGCCGGCAAACCCAATTGACCAATGTTGGAGATGTGACCAAAATTGGGATAAAAACCGAAAGAAGCTTGCAGATTGTGTAATGGGGTTTGCCCACGGCACAACCGGAGGCAAAGACGGGAAAATCTACGTGGTAAACGACAATTCCGACAACGACCTACTGGACCCTAAACCAGGAACATTGAGATATGCGGTTACTCGGCCAGAGCCACTGTGGATCACTTTTTCGAAAAGCATGAACATTAAGCTGAAAGGAGAGCTTATGCTAACGGCTAACAAGACGATCGATGCACGTGGTGCCAATGTGCACATCAAAGATGGTGCCCAGATAACGATCCAGTACGTGAACAACATTATCATTCACGGATTGCACATCCACGATATTAAGCCAGTTAAAGGTGGACTTATAAGAGATTCCGTCACCCACTACGGCGTTCGCGCCACCAGTGACGGCGACGGGATTTCCGTATTTGGATCCACACATGTTTGGCTTGATCATCTTTCCATGACCAATTGTTCTGATGGCCTCATCGATGTCGTTAGTGCGTCAACTGCAGTTACCATCTCCAACTGCCATTTTGTCAAACACAACGACGTTTTGTTATTCGGCGCCACTGATAGCTTCTCAGGAGATAAAGTGATGCAGGTGACTTTGGCTTTTAACCATTTTGGGAAAGGATTGGTTCAGAGAATGCCGAGGTGCAGATGGGGCTTCTTTCATATTGTTAACAACGACTACACTCACTGGCTAATGTACGCCGTAGGTGGCAGCCAGCAACCCACCATCATCAGCCAGGGAAACCGTTTTGTCGCCCCGGAAGACAGGAATGCAAAAGAAGTGACAAAAAGGACTGAGATAAATTCAAATGGGTGGAAGAATTGGAATTGGAGATCGGAGGGTGATTTATTCGTGAATGGAGCCTTCTTTGTGGAGTCAGGGAAAAAAGTTGCACAGCCTCCCAAGACAGACGTGAAAGCACAATCTGCGAAGTCCGTGGCTTCTCTGACTAAAGATGCAGGTCCTATAAAATGTGTTTTAAACAAGGCCTGCTGA 1302 0.4616 MESTKFNLLFFYVIFLAILPTLKANIGHMDHVWHRRMKEAREAAKKAYKPNPMKVTAEFNTQVMRALKGSNSTRRDLKSNSKCTPANPIDQCWRCDQNWDKNRKKLADCVMGFAHGTTGGKDGKIYVVNDNSDNDLLDPKPGTLRYAVTRPEPLWITFSKSMNIKLKGELMLTANKTIDARGANVHIKDGAQITIQYVNNIIIHGLHIHDIKPVKGGLIRDSVTHYGVRATSDGDGISVFGSTHVWLDHLSMTNCSDGLIDVVSASTAVTISNCHFVKHNDVLLFGATDSFSGDKVMQVTLAFNHFGKGLVQRMPRCRWGFFHIVNNDYTHWLMYAVGGSQQPTIISQGNRFVAPEDRNAKEVTKRTEINSNGWKNWNWRSEGDLFVNGAFFVESGKKVAQPPKTDVKAQSAKSVASLTKDAGPIKCVLNKAC 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4478g00009 433 Gene3D - 86 426 IPR012334 -
Vium4478g00009 433 SUPERFAMILY Pectin lyase-like 87 419 IPR011050 -
Vium4478g00009 433 PRINTS Pollen allergen Amb family signature 377 401 IPR018082 -
Vium4478g00009 433 PRINTS Pollen allergen Amb family signature 133 158 IPR018082 -
Vium4478g00009 433 PRINTS Pollen allergen Amb family signature 335 354 IPR018082 -
Vium4478g00009 433 PRINTS Pollen allergen Amb family signature 109 126 IPR018082 -
Vium4478g00009 433 PRINTS Pollen allergen Amb family signature 313 332 IPR018082 -
Vium4478g00009 433 PRINTS Pollen allergen Amb family signature 169 185 IPR018082 -
Vium4478g00009 433 PRINTS Pollen allergen Amb family signature 233 254 IPR018082 -
Vium4478g00009 433 SMART amb_all 161 358 IPR002022 -
Vium4478g00009 433 Pfam Pectate lyase, N terminus 25 77 IPR007524 GO:0030570
Vium4478g00009 433 PANTHER PECTATE LYASE 18-RELATED 40 429 IPR045032 GO:0030570
Vium4478g00009 433 Pfam Pectate lyase 168 352 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4478g00009 Vium-Chr4478 68755 70743 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4478g00009 8 433 Polysaccharide Lyase AT1G14420 54.911 0.0 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4478g00009 K01728 - gmx:100801864 706.057