Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4478g00005 ATGGTGGGTGGGACTGTCTTTTCCGCTGCTTCAAGTTTAACCACTTTGCTTCCCAACCAATCACCTCCTTCCGCCTCTCAGCCTCTCGATTCCATTTTCCACTCTTCTTCTTCTGCTTCTTCTTCCCCTTTTCTCGGTTCAAGATCTATAGTGAGCTTTGGAGGTGTTCAAGGGGGGAAAGGGTGCAACGAGTCGTTCTTCCTGCCTTACGATGATAATGGGGATGAGGACACGGACGAGTACTTTCATCAGCCTGAGAAAAAACGCAGGCTGTCCGTTGACCAAGTGCAGTTTCTTGAGAAGAGCTTTGATGAGGAGAATAAGCTCGAACCCGAGAGGAAGATTCGGCTAGCTAAAGAACTCGGGTTGCAGCCGCGGCAGGTGGCGATTTGGTTTCAGAACCGCCGGGCGCGGTGGAAGACGAAGCAGATGGAGAAGGATTATGATTCCCTGCACGCATGCTATAATGATCTCAAGGCCAGCTATGATGATCTTCTCAGGGAAAAGGATAAGCTCCAAGCTGAGGTAGCAAAGCTCAGTGAGAAGGTGCTCGAAAGAGAAAAACTGGAGGAGGGGAACTTTTACAGGGCTGAAACCAAGGGATTTCAGGAGCCGCTGCAGAAGTCTATGATTGATTCAGCTTCAGAGGGTGCAGGGTCCAAAGTTGACATTAGTTCAGCAAAGAGTGACATGTTTGATTCATCAGAAAGCCCACGTTACACTGATGGAGTACACTCTACTCTCCTTGAGACCGGTGACTCTTCTTATGTGTTTGAAGCTGATCAGTCTGATGTGTCACAGGATGAAGGAGATAACCTGAGCAATACCCTTTTGCCTCATTACATGTTTCCCAAACTTGAAGATGTTGGTTACACGGACCAGCCTCATAATTCATGTCATTTTGGATTTCCCGAGGAAGAAGATCAAGCCATCTGGTCTTGGTCTTACTGA 951 0.4795 MVGGTVFSAASSLTTLLPNQSPPSASQPLDSIFHSSSSASSSPFLGSRSIVSFGGVQGGKGCNESFFLPYDDNGDEDTDEYFHQPEKKRRLSVDQVQFLEKSFDEENKLEPERKIRLAKELGLQPRQVAIWFQNRRARWKTKQMEKDYDSLHACYNDLKASYDDLLREKDKLQAEVAKLSEKVLEREKLEEGNFYRAETKGFQEPLQKSMIDSASEGAGSKVDISSAKSDMFDSSESPRYTDGVHSTLLETGDSSYVFEADQSDVSQDEGDNLSNTLLPHYMFPKLEDVGYTDQPHNSCHFGFPEEEDQAIWSWSY 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4478g00005 316 MobiDBLite consensus disorder prediction 16 44 - -
Vium4478g00005 316 Gene3D - 137 186 - -
Vium4478g00005 316 ProSiteProfiles 'Homeobox' domain profile. 82 142 IPR001356 GO:0003677
Vium4478g00005 316 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 74 234 IPR045224 GO:0003700
Vium4478g00005 316 ProSitePatterns 'Homeobox' domain signature. 117 140 IPR017970 GO:0000981|GO:0006355
Vium4478g00005 316 Coils Coil 155 189 - -
Vium4478g00005 316 PRINTS Lambda-repressor HTH signature 113 122 IPR000047 GO:0003677
Vium4478g00005 316 PRINTS Lambda-repressor HTH signature 122 138 IPR000047 GO:0003677
Vium4478g00005 316 CDD homeodomain 87 143 IPR001356 GO:0003677
Vium4478g00005 316 SMART HOX_1 85 146 IPR001356 GO:0003677
Vium4478g00005 316 Pfam Homeodomain 87 140 IPR001356 GO:0003677
Vium4478g00005 316 FunFam Homeobox-leucine zipper protein HAT5 80 144 - -
Vium4478g00005 316 Pfam Homeobox associated leucine zipper 142 183 IPR003106 GO:0006355|GO:0043565
Vium4478g00005 316 SUPERFAMILY Homeodomain-like 73 144 IPR009057 -
Vium4478g00005 316 Gene3D - 90 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4478g00005 Vium-Chr4478 36241 38524 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4478g00005 35 183 Homeobox Transcription Factor Family AT3G01470 50.000 3.38e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vium4478g00005 Homeodomain 1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4478g00005 - - gmx:732618 485.337