Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4478g00003 ATGGATGGTGATGGTGGTGGCACAGTTGCGGTTCAACAGCAAAGAATCCTTTCTGATTTAGAAAACACTGAACAATCACTGAAATGGAGTACACGCCTAAAGATTGCTCTTGGTTCTGCCCGGGGTTTGGCTTACTTGCACCACGACTGCTGCCCGAAAATTGTGCACCGCGACATAAAATCCAGCAACATCCTTCTTGATGAGAACATGGAGCCTCGTGTCTCTGATTTTGGTCTTGCAAAGCTTTTGGTTGACGAAGAGGCCCATGTTACCACAGTGGTTGCAGGCACCTTTGGTTATCTGGCACCAGAGTATCTACAAAGTGGAAGAGCGACTGAGAAGTCAGATGTGTATAGTTTTGGAGTTCTGTTGCTAGAACTTGTAACTGGAAAGAGACCAACAGATCCTTCATTTGCAAGGAGAGGAGTAAATGTTGTTGGTTGGATGAACACGTTCCGGAAAGAAAATAGATTGGAGGACGTAGTAGACAAAAGATGTAGTGATTCAGTAGATGCAGAATCTGTGGAGGTAATTCTTGAACTAGCAGCAAGTTGCACTGATGCAAATGCGGATGAACGTCCATCAATGAACCAAGTGTTACAGATACTGGAACAAGAGGTCATGTCTCCCTGCCCAAGTGATTTTTATGAATCACACTCAGATCACTGA 669 0.4454 MDGDGGGTVAVQQQRILSDLENTEQSLKWSTRLKIALGSARGLAYLHHDCCPKIVHRDIKSSNILLDENMEPRVSDFGLAKLLVDEEAHVTTVVAGTFGYLAPEYLQSGRATEKSDVYSFGVLLLELVTGKRPTDPSFARRGVNVVGWMNTFRKENRLEDVVDKRCSDSVDAESVEVILELAASCTDANADERPSMNQVLQILEQEVMSPCPSDFYESHSDH 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4478g00003 222 Gene3D Transferase(Phosphotransferase) domain 1 13 212 - -
Vium4478g00003 222 ProSitePatterns Serine/Threonine protein kinases active-site signature. 54 66 IPR008271 GO:0004672|GO:0006468
Vium4478g00003 222 PIRSF ILK 13 214 - -
Vium4478g00003 222 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 10 214 - -
Vium4478g00003 222 Pfam Protein kinase domain 17 201 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4478g00003 222 ProSiteProfiles Protein kinase domain profile. 1 208 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4478g00003 222 SMART serkin_6 2 208 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4478g00003 222 SUPERFAMILY Protein kinase-like (PK-like) 22 206 IPR011009 -
Vium4478g00003 222 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 17 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4478g00003 Vium-Chr4478 9281 10640 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4478g00003 20 212 Receptor kinase-like Gene Family AT2G35620 61.658 7.35e-87 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Vium4478g00003 Pkinase 1.7e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4478g00003 - - vum:124838099 446.047