Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4478g00002 ATGGAAATGGGTCGTGTATTGTTGATGCTGTTGGTTTTTTCCACCACTGTTTTATACCCTTGTTCTCTTGCTCTCACGCAAGACGGACATACATTGTTGGAGATCAAAAGCACTTTAAATGATACAAGGAATTTTCTGAGCAATTGGAAAAAGTCTGATGAGTCTCACTGTACATGGACCGGTATCACTTGTCATCCTGGGGAACAACGAGTACGCTCAATAAATCTACCTTATATGCAACTTGGGGGTATTATATCTCCCAGCATTGGCAAACTCAGCAGACTGCAGAGACTGGCACTTCATCAGAATGGCTTACATGGAGTTATTCCTAATGAAATTGGCAATTGTACAGAGCTTAGAGCACTATATTTGAGAGCTAATTATTTACAAGGAGGCATCCCATCAAATATTGGAAATCTTTCTTATTTACATGTATTGGATTTGTCAAGTAACTCATTGAAGGGTGCTGTACCATCCTCTATTGGTCGTCTTACACAACTGCGTGTTCTGAACTTGTCAACTAATTTCTTTTCCGGTGAAATCCCTGACCTTGGAGTACTAAGCACCTTCGGGAACAATGCGTTTATTGGGAACTTAGATCTTTGTGGGCGGCAAGTTCAGAAACCATGTCGGACATCACTTGGTTTTCCAGTGGTGCTACCACATGCAGAAAGTGATGAAGCTGCAGTTCCTGCTAAAAGATCTTCACATTATGTGAAGTGGGTGTTAGTTGGTGCAATAACAATAATGGGGCTTGCACTTGTTATAACTCTTTCGTTACTATGGATTTGCTTGCTATCAAAGAAGGAAAGAGCTGCTAGAAAATACATAGAAGTTAAGGATCAAGTCAACCCAGAATCAAGTAGGAAGGATGATGGTACAAAACTTATCACCTTCCATGGTGATCTGCCATACACATCATTTGAGATCATAGAAAAGTTGGAGTCTCTCGACGAAGATGATGTGGTAGGATCTGGAGGATTTGGTACCGTATATAGAATGGTGATGAATGATTGTGGTACATTTGCTGTTAAGAGGATTGATAGAAGCCGTGAAGGTTCTGATCAGGGTTTTGAGAGGGAACTAGAGATATTGGGTAGCATCAAGCACATAAATCTAGTTAACCTGCGTGGTTACTGCAGACTTCCTTCTACTAAGCTTCTAATCTACGACTATTTGGCCATGGGAAGCTTAGACGATCTCTTGCATGAAAACACTGAACAATCACTGAAATGGAGTACACGCCTAAAGATTGCTCTTGGTTCTGCCCGGGGTTTGGCTTACTTGCACCACGACTGCTGCCCGAAAATTGTGCACCGCGACATAAAATCCAGCAACATCCTTCTTGATGAGAACATGGAGCCTCGTGTCTCTGATTTTGGTCTTGCAAAGCTTTTGGTTGATGAAGAGGCCCATGTTACCACAGTGGTTGCAGGCACCTTTGGTTATCTGGCACCAGAGTATCTACAAAGTGGAAGAGCGACTGAGAAGTCAGATGTGTATAGTTTTGGAGTTCTGTTGCTAGAACTTGTAACTGGAAAGAGACCAACAGATCCTTCATTTGCAAGGAGAGGAGTAAATGTTGTTGGTTGGATGAACACGTTCCGGAAAGAAAATAGATTGGAGGACGTAGTAGACAAAAGATGTAGTGATTCAGTAGATGCAGAATCTGTGGAGGTAATTCTTGAACTAGCAGCAAGTTGCACTGATGCAAATGCGGATGAACGTCCATCAATGAACCAAGTGTTACAGATACTGGAACAAGAGGTCATGTCTCCCTGCCCAAGTGATTTTTATGAATCACACTCAGATCACTGA 1818 0.4208 MEMGRVLLMLLVFSTTVLYPCSLALTQDGHTLLEIKSTLNDTRNFLSNWKKSDESHCTWTGITCHPGEQRVRSINLPYMQLGGIISPSIGKLSRLQRLALHQNGLHGVIPNEIGNCTELRALYLRANYLQGGIPSNIGNLSYLHVLDLSSNSLKGAVPSSIGRLTQLRVLNLSTNFFSGEIPDLGVLSTFGNNAFIGNLDLCGRQVQKPCRTSLGFPVVLPHAESDEAAVPAKRSSHYVKWVLVGAITIMGLALVITLSLLWICLLSKKERAARKYIEVKDQVNPESSRKDDGTKLITFHGDLPYTSFEIIEKLESLDEDDVVGSGGFGTVYRMVMNDCGTFAVKRIDRSREGSDQGFERELEILGSIKHINLVNLRGYCRLPSTKLLIYDYLAMGSLDDLLHENTEQSLKWSTRLKIALGSARGLAYLHHDCCPKIVHRDIKSSNILLDENMEPRVSDFGLAKLLVDEEAHVTTVVAGTFGYLAPEYLQSGRATEKSDVYSFGVLLLELVTGKRPTDPSFARRGVNVVGWMNTFRKENRLEDVVDKRCSDSVDAESVEVILELAASCTDANADERPSMNQVLQILEQEVMSPCPSDFYESHSDH 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4478g00002 605 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Vium4478g00002 605 SMART serkin_6 317 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4478g00002 605 Pfam Leucine rich repeat 118 175 IPR001611 GO:0005515
Vium4478g00002 605 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 73 587 - -
Vium4478g00002 605 Pfam Protein kinase domain 320 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4478g00002 605 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 393 597 - -
Vium4478g00002 605 Gene3D Phosphorylase Kinase; domain 1 280 392 - -
Vium4478g00002 605 SUPERFAMILY Protein kinase-like (PK-like) 295 587 IPR011009 -
Vium4478g00002 605 Gene3D Ribonuclease Inhibitor 25 212 IPR032675 -
Vium4478g00002 605 ProSitePatterns Protein kinases ATP-binding region signature. 323 345 IPR017441 GO:0005524
Vium4478g00002 605 Gene3D Transferase(Phosphotransferase) domain 1 393 595 - -
Vium4478g00002 605 ProSiteProfiles Protein kinase domain profile. 317 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4478g00002 605 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 25 187 - -
Vium4478g00002 605 SUPERFAMILY L domain-like 25 208 - -
Vium4478g00002 605 ProSitePatterns Serine/Threonine protein kinases active-site signature. 437 449 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4478g00002 Vium-Chr4478 3506 7561 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4478g00002 24 595 Receptor kinase-like Gene Family AT2G35620 49.825 0.0 558
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Vium4478g00002 Pkinase 9.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4478g00002 - - gmx:100805042 1136.71