Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4478g00001 AACTTGTCAACTAATTTCTTTTCCGGTGAAATCCCTGACCTTGGAGTACTAAGCACCTTCGGGAACAATGCGTTTATTGGGAACTTAGATCTTTGTGGGCGGCAAGTTCAGAAACCATGTCGGACATCACTTGGTTTTCCAGTGGTGCTACCACATGCAGAAAGTGATGAAGCTGCAGTTCCTGCTAAAAGATCTTCACATTATGTGAAGTGGGTGTTAGTTGGTGCAATAACAATAATGGGGCTTGCACTTGTTATAACTCTTTCGTTACTATGGATTTGCTTGCTATCAAAGAAGGAAAGAGCTGCTAGAAAATACATAGAAGTTAAGGATCAAGTCAACCCAGAATCAAGTAGGAAGGATGATGGTACAAAACTTATCACCTTCCATGGTGATCTGCCATACACATCATTTGAGATCATAGAAAAGTTGGAGTCTCTCGACGAAGATGATGTGGTAGGATCTGGAGGATTTGGTACCGTATATAGAATGGTGATGAATGATTGTGGTACATTTGCTGTTAAGAGGATTGATAGAAGCCGTGAAGGTTCTGATCAGGGTTTTGAGAGGGAACTAGAGATATTGGGTAGCATCAAGCACATAAATCTAGTTAACCTGCGTGGTTACTGCAGACTTCCTTCTACTAAGCTTCTAATCTACGACTATTTGGCCATGGGAAGCTTAGATGATCTCTTGCATGAAAACACTGAACAATCACTGAAATGGAGTACACGCCTAAAGATTGCTCTTGGTTCTGCCCGGGGTTTGGCTTACTTGCACCACGACTGCTGCCCGAAAATTGTGCACCGCGACATAAAATCCAGCAACATCCTTCTTGATGAGAACATGGAGCCTCGTGTCTCTGATTTTGGTCTTGCAAAGCTTTTGGTTGATGAAGAGGCCCATGTTACCACAGTGGTTGCAGGCACCTTTGGTTATCTGGCACCAGAGTATCTACAAAGTGGAAGAGCGACTGAGAAGTCAGATGTGTATAGTTTTGGAGTTCTGTTGCTAGAACTTGTAACTGGAAAGAGACCAACAGATCCTTCATTTGCAAGGAGAGGAGTAAATGTTGTTGGTTGGATGAACACGTTCCGGAAAGAAAATAGATTGGAGGACGTAGTAGACAAAAGATGTAGTGATTCAGTAGATGCAGAATCTGTGGAGGTAATTCTTGAACTAGCAGCAAGTTGCACTGATGCAAATGCGGATGAACGTCCATCAATGAACCAAGTGTTACAGATACTGGAACAAGAGGTCATGTCTCCCTGCCCAAGTGATTTTTATGAATCACACTCAGATCACTGA 1308 0.4274 NLSTNFFSGEIPDLGVLSTFGNNAFIGNLDLCGRQVQKPCRTSLGFPVVLPHAESDEAAVPAKRSSHYVKWVLVGAITIMGLALVITLSLLWICLLSKKERAARKYIEVKDQVNPESSRKDDGTKLITFHGDLPYTSFEIIEKLESLDEDDVVGSGGFGTVYRMVMNDCGTFAVKRIDRSREGSDQGFERELEILGSIKHINLVNLRGYCRLPSTKLLIYDYLAMGSLDDLLHENTEQSLKWSTRLKIALGSARGLAYLHHDCCPKIVHRDIKSSNILLDENMEPRVSDFGLAKLLVDEEAHVTTVVAGTFGYLAPEYLQSGRATEKSDVYSFGVLLLELVTGKRPTDPSFARRGVNVVGWMNTFRKENRLEDVVDKRCSDSVDAESVEVILELAASCTDANADERPSMNQVLQILEQEVMSPCPSDFYESHSDH 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4478g00001 435 SMART serkin_6 147 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4478g00001 435 Gene3D Ribonuclease Inhibitor 1 44 IPR032675 -
Vium4478g00001 435 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 1 417 - -
Vium4478g00001 435 Pfam Protein kinase domain 149 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4478g00001 435 ProSiteProfiles Protein kinase domain profile. 147 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4478g00001 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 267 279 IPR008271 GO:0004672|GO:0006468
Vium4478g00001 435 Gene3D Phosphorylase Kinase; domain 1 110 222 - -
Vium4478g00001 435 SUPERFAMILY Protein kinase-like (PK-like) 125 417 IPR011009 -
Vium4478g00001 435 ProSitePatterns Protein kinases ATP-binding region signature. 153 175 IPR017441 GO:0005524
Vium4478g00001 435 Gene3D Transferase(Phosphotransferase) domain 1 223 425 - -
Vium4478g00001 435 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 223 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4478g00001 Vium-Chr4478 55 2493 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4478g00001 1 425 Receptor kinase-like Gene Family AT2G35620 52.471 8.84e-155 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Vium4478g00001 Pkinase 4.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4478g00001 - - vum:124838095 871.692