Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4477g00001 GAACACTTTGGTTTTGGACCTCTCTGTGCGTATTTATCCATAAATTACTTGGACAGTTTCCTCTCTGTTTATGAGTTACCAAAGCAACGAGTTTGGACAATGAAATTGTTGGTTGTAGGTTTCATATCTTTGGCAGCCAAAATGGAAGAGACTGATGTTCCTACATCTCTTGATTTGTAGGTGGGTGAATCTAAGTATATATTTGAAGCCAAAACAATTCAGAGAATGAAGCTTCTTGTTCTGAACACATTGAAGTGGAGAATGCAGGCAATTACCCCATTTTCCTTCATTGACTATTTCCTTCAGAAGATCAATGATGATGAAGCTTCAATGGGAGCTTCAATTTTGCAATCCTCCAAGCTTATACTGAGTACTGTGAGAGGAATTGACTTCATAGAGTTCAGACCCTCAGAGATTGCAGCAGCAGTGGCAATATCTGTGGTGGGGAACGACTTGCGG 459 0.4031 EHFGFGPLCAYLSINYLDSFLSVYELPKQRVWTMKLLVVGFISLAAKMEETDVPTSLDLXVGESKYIFEAKTIQRMKLLVLNTLKWRMQAITPFSFIDYFLQKINDDEASMGASILQSSKLILSTVRGIDFIEFRPSEIAAAVAISVVGNDLR 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4477g00001 153 Gene3D - 90 146 - -
Vium4477g00001 153 PANTHER CYCLINS 3 144 IPR039361 -
Vium4477g00001 153 FunFam D6-type cyclin 1 89 - -
Vium4477g00001 153 Gene3D - 2 89 - -
Vium4477g00001 153 Pfam Cyclin, C-terminal domain 91 146 IPR004367 -
Vium4477g00001 153 Pfam Cyclin, N-terminal domain 2 88 IPR006671 -
Vium4477g00001 153 SUPERFAMILY Cyclin-like 1 88 IPR036915 -
Vium4477g00001 153 CDD CYCLIN_AtCycD-like_rpt1 1 86 - -
Vium4477g00001 153 CDD CYCLIN_AtCycD-like_rpt2 91 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4477g00001 Vium-Chr4477 46382 47217 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4477g00001 1 149 Core Cell Cycle Gene Families AT5G65420 56.667 5.43e-57 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4477g00001 K18810 - vum:124838092 287.73