Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4471g00008 ATGGAAGAAGCTACCTCCAATCATGACTCTGATCTTCCACCAGTCACACATTCTTCTCCAATCATCTTCTTTGATGGCAAAACACTAGCCATGGATGAGATGGATTTCTTTGCAAACAACAACAACAACAGAAAGAACAAAAATGTATTTCCCGATGATCACGAAATGCTGCACCAAATGGAGCTTCATGTCGATACTAGTTTAGATCTCCTTACAAAGACTTCTCCTACCAATAGATCAACTGTGGGAGAAGGATCATCGGAAGCAAGGGGGAATGAAAGAGATAATAAGTTTGCAGCTATGCTAGCTGAATTGCACCACATGAATGCTGAAAATCAACGCTTGAGAGATGAGGTTGATAAGGTGAACGATAAGTACCATGCTTTACACAATCAACTTATCAAACAGATAGAGAAACAACGTAAGAATGAGGGTAAGAAAGCTGATATGATTCCGAGGCCATTCTTGGATATTGGAGTTGCTATGAAGGAAGAGAATTCGCAGCAATATTCGAAGGGAAAACTACAAGAGAGCAAAAACAAGATCGACTTGATTGAGAGCAAGAAACAGAAGATTTACACTAATAAAGATGTTGCTGAGTTAGAGACATCTGAGAAAGCTATTCCAAGGTGGCTCTCAAACGAAGTCTCAAGATCGAGTTCTTTCAAGGATGTTGATGAAGCGTCAGAAACCATGTCAATGATCAAGAAAGCTCGTGTATCAGTTCGAGCAAGATCTGTTTCTTCTATGATTTCTGATGGATGTCAATGGAGAAAGTATGGGCAGAAGATGGCTAAAGGGAACCCATGTCCAAGAGCTTATTATCGTTGTTCAATGGGGACTGGTTGCCCAGTTCGGAAACAAGTGCAAAGGAGTGCAGAAGATCAAAGTGTGTTGATCACAACATATGAAGGACAGCATAATCATGTACTTCCTCCAGCTGCCAAACCAATGGCATCCACCACATCTGCAGCTGCATCAATGCTTCTTTCAGGATCAATGCCAAGCTCAGATGGCCTTCTACACCCAAACATTTTAGAAAGTGCAACGCTTCCATTTTCACATAACTTAGCAACCCTCTCAGCTTCAGCTCCATTTCCAACTATCACTTTGGATCTCACTCAAACTCCCACCAATAATATTAATACTTCCTCACAACAAGATCCACCACAGGATTACCAACTCAGCCTACTTTCCCCACTTTTGGCACCAAATTTTTTTCACCAGAGTAAGCTTTCTACCTTACATGCCTCTCAGGGAACAGAAACTGCTTCATTTGCTGACACAGTAAATGCAGCAACAGCTGCTATAACCACAGACCCCAAGTTCAGTGCAGCTCTTATGGCAGCCATAACATCTATCATTGGAAGTTCACATCCAGTGGAGACTCAGCATTGCAATAACAAACAAGACTAG 1416 0.4167 MEEATSNHDSDLPPVTHSSPIIFFDGKTLAMDEMDFFANNNNNRKNKNVFPDDHEMLHQMELHVDTSLDLLTKTSPTNRSTVGEGSSEARGNERDNKFAAMLAELHHMNAENQRLRDEVDKVNDKYHALHNQLIKQIEKQRKNEGKKADMIPRPFLDIGVAMKEENSQQYSKGKLQESKNKIDLIESKKQKIYTNKDVAELETSEKAIPRWLSNEVSRSSSFKDVDEASETMSMIKKARVSVRARSVSSMISDGCQWRKYGQKMAKGNPCPRAYYRCSMGTGCPVRKQVQRSAEDQSVLITTYEGQHNHVLPPAAKPMASTTSAAASMLLSGSMPSSDGLLHPNILESATLPFSHNLATLSASAPFPTITLDLTQTPTNNINTSSQQDPPQDYQLSLLSPLLAPNFFHQSKLSTLHASQGTETASFADTVNAATAAITTDPKFSAALMAAITSIIGSSHPVETQHCNNKQD 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4471g00008 471 MobiDBLite consensus disorder prediction 73 94 - -
Vium4471g00008 471 SUPERFAMILY WRKY DNA-binding domain 248 312 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium4471g00008 471 Coils Coil 98 132 - -
Vium4471g00008 471 FunFam probable WRKY transcription factor 31 236 313 - -
Vium4471g00008 471 Gene3D WRKY domain 236 313 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium4471g00008 471 MobiDBLite consensus disorder prediction 73 87 - -
Vium4471g00008 471 Pfam WRKY DNA -binding domain 253 309 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium4471g00008 471 ProSiteProfiles WRKY domain profile. 246 312 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium4471g00008 471 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 86 465 IPR044810 GO:0003700
Vium4471g00008 471 SMART WRKY_cls 251 311 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4471g00008 Vium-Chr4471 166577 169921 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4471g00008 99 455 WRKY Transcription Factor Family AT4G04450 43.687 1.82e-87 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium4471g00008 WRKY 3.2e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4471g00008 - - pvu:PHAVU_006G047300g 671.774