Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4471g00007 ATGGCCGTTGTTCCTCGTGGTGATTCTATAGTGACGAGATCAGTGTGGGCGTCTAATCTTGAAACGGAATTTGAGCTGATCCGTTCTGTCATCTCCTCCTACCCTTTGATCAGCATGGACACAGAATTTCCCGGCGTGATCTTTCAGTCCAACTCCGATATGCGGGAACCACAATATAATTACGCCCTAATGAAAGCTAACGTGGAATGTCTGCATCTGATTCAAGTTGGTCTCACTCTTTCAGACTGCGATGGAAACCTTCCAAGCTTTCAATCTTCTGATCGTTTCATCTGGGAATTCAACTTCCGCGAGTTCAACGTCGCATGCGATCCTCACGCGACCGAGTCTATTGCACTCCTTCAACGTCAAGGCGTCGATTTGGAAAAGAATCGGAGATTCGGAATAGACATTGAGCGGTTTGTGGAGCTGTTGATGTTCTCTGGAATGGTTTGTAACAATAATGTTCAATGGATCACTTTTCATGGTGCCTACGACTTTGGGTATCTTGTGAAAGCATTGACTTACAGATTTTTTCCCACACAACCCCTTTTGCCTGTGGACTTATCACACTTTATGCACTTGGTTAAGTTTTTCTTTGGAGAGACAATATACGACGTTAAACATCTCATCAAGTTCTGTCCTGATCTCCACGGTGGTTTGGATCGAGTGTCTGACTCTCTGTGTTTGGATCGGGCAGTTGGTAAGAGTCATCAAGCAGGCTCTGACAGTTTACTCACTCTCCATGCTTTCAACAAAATTAAGAATGTTTATTTTTCTAAACACTCTAGTTCTCACATTCTAAACTACAAGAATGTCTTATATTTGTGCCTCGAACCCTATCCACAGCAAAATATTAAGTTCTTCCACTTTGGTATTGAAGGCAAAATGGATTTATCTGTGCCTGCCATTAAGGATTTGATCTTGGAGGCCGTCAAAGTTTTAATTGGTTATGTTAAAACTCTTGGAATACTGTGCTTTCTGGGTTTTAGGAGAGTTTTTGGATGCTTTGCATTTTGCACGTTCTATGCATTTTCGTGGGATAGTTTTTGA 1050 0.421 MAVVPRGDSIVTRSVWASNLETEFELIRSVISSYPLISMDTEFPGVIFQSNSDMREPQYNYALMKANVECLHLIQVGLTLSDCDGNLPSFQSSDRFIWEFNFREFNVACDPHATESIALLQRQGVDLEKNRRFGIDIERFVELLMFSGMVCNNNVQWITFHGAYDFGYLVKALTYRFFPTQPLLPVDLSHFMHLVKFFFGETIYDVKHLIKFCPDLHGGLDRVSDSLCLDRAVGKSHQAGSDSLLTLHAFNKIKNVYFSKHSSSHILNYKNVLYLCLEPYPQQNIKFFHFGIEGKMDLSVPAIKDLILEAVKVLIGYVKTLGILCFLGFRRVFGCFAFCTFYAFSWDSF 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4471g00007 349 Pfam CAF1 family ribonuclease 15 135 IPR006941 -
Vium4471g00007 349 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 11 274 IPR039637 GO:0004535|GO:0030014
Vium4471g00007 349 SUPERFAMILY Ribonuclease H-like 13 264 IPR012337 -
Vium4471g00007 349 Gene3D - 2 277 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4471g00007 Vium-Chr4471 123696 125613 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4471g00007 267 346 Protein tyrosine phosphatase (PTP) family AT3G02800 42.222 1.45e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4471g00007 K12581 - gmx:100805583 328.176