Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium4471g00003 | ATGGGCAAGAAAATGAAGCTTCCTTCCCTTCTCCACAACAAGAACTCACACCCCAAACCTTCTTCCACTTCCTGGCCATGGCCCTCTTGCCACCAACCTCGAACCCTCTCTTTTCGAGACCAAAACGATGTCGCTTTCAAAACCATCAACCCAGCCTACTTCGACATGCCCGAGAGCTCCCACTCCTTCTTCACTGTCTCTCCCGACTCTGGAAGCTTCTCTACCGCTTCAGAAGAAGATTCTAGAAGACCGGATTCCCTTGAGACCCTCATTCGCCCCTTGCCTTCCGACCGTTTGTTCTTCCACCCCGACCAGACAAGCTCCATATTAGAGTCCAAAGCAGGAACATCGACACCAACACCAACACAAACACAAACAACTACAACACCAACACCACCACCAACAACAACAACGTTGCCCTTCAAAGACAGCGTGGTTATGTCTGTGGAGTCTCAGGACCCTTACGTGGACTTCCTCAGGTCCATGGAAGAGATGGTGGAAGCCCAGTGCGTTAAAGACTTTGATGGTCTCCAAGAGCTTTTATGTTGGTATTTGAAAGTCAATGGAAAAAGCAACCATGGTTATATTGTCGGTGCTTTCATTGATCTATTGGTGGCTTTTTCTGATATAAACTCTCATTCTCCTTCTTCCCCTTTGTCATTCTACAGCTCTTCTCTTTCTTCCTCTTGCAGCACTCACTGTGTTTCATGTTTGGAAGCTGAGGACGAGGTTGATTCAGCTCCCCGTTAA | 750 | 0.4787 | MGKKMKLPSLLHNKNSHPKPSSTSWPWPSCHQPRTLSFRDQNDVAFKTINPAYFDMPESSHSFFTVSPDSGSFSTASEEDSRRPDSLETLIRPLPSDRLFFHPDQTSSILESKAGTSTPTPTQTQTTTTPTPPPTTTTLPFKDSVVMSVESQDPYVDFLRSMEEMVEAQCVKDFDGLQELLCWYLKVNGKSNHGYIVGAFIDLLVAFSDINSHSPSSPLSFYSSSLSSSCSTHCVSCLEAEDEVDSAPR | 249 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium4471g00003 | 249 | MobiDBLite | consensus disorder prediction | 110 | 139 | - | - | |
| Vium4471g00003 | 249 | Pfam | Transcriptional repressor, ovate | 151 | 206 | IPR006458 | - | |
| Vium4471g00003 | 249 | NCBIfam | uncharacterized plant-specific domain TIGR01568 | 145 | 207 | IPR006458 | - | |
| Vium4471g00003 | 249 | ProSiteProfiles | OVATE domain profile. | 145 | 206 | IPR006458 | - | |
| Vium4471g00003 | 249 | PANTHER | TRANSCRIPTION REPRESSOR OFP7-RELATED | 41 | 207 | IPR038933 | GO:0045892 | |
| Vium4471g00003 | 249 | MobiDBLite | consensus disorder prediction | 14 | 30 | - | - | |
| Vium4471g00003 | 249 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vium4471g00003 | Vium-Chr4471 | 81921 | 82719 | Dispersed |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | OFP | Vium4471g00003 | Ovate | 5.3e-21 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vium4471g00003 | - | - | vum:124838078 | 435.647 |