Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4471g00002 ATGTCGAATTTGCCCCAATCGTTGTCTATGGGTGCGGCCTTTGGTGGCGGCGGTCCGCCATCTTCGTCCGGTGGGACTGGAGCACAGGGCTCCGGTGGGGGCAAAGATCGGAAGATGGCATCTGCTGAGCAACTGGTATTGGAACTCAGCAACCCTGAACTCCGAGAAAATGCGCTTCTGGAATTGTCCAAGAAGAGGGAGCTATTTCAAGATCTGGCTCCTTTGTTATGGAATTCTTTTGGTACTATTGCTGCACTTTTGCAGGAAATAGTTTCAATTTACCCAGTTCTTTCACCACCAAATCTTACTCCTGCACAATCAAATCGAGTGTGTAATGCTCTTGCTCTTCTTCAGTGTGTAGCATCTCACCCTGATACAAGGATGCTATTCCTCAACGCTCATATACCTTTATATCTATACCCCTTCCTTAATACAACAAGCAAGTCAAGACCATTTGAGTACTTGAGGCTTACCAGTCTTGGTGTCATCGGTGCATTGGTGAAGGTTGATGATACAGAAGTTATAAGTTTCCTTCTTTCAACAGAAATAATTCCTCTGTGCTTGCGCACCATGGAAATGGGTAGTGAGCTATCCAAAACAGTAGCAACATTTATTGTTCAAAAAATTCTTTTGGACGATGTCGGCCTGGACTATATTTGTACTACAGCCGAGCGCTTTTTTGCGGTAGGTAGAGTTTTGGGGAACATGGTGGCAGCTCTTGCTGAGCAACCCTCATCTCGTCTACTGAAGCATATCATTCGGTGCTATCTTCGTCTGTCAGATAATCCAAGGGCTTGCGATGCATTAAGAAGCTGTCTACCAGACATGTTAAGAGATGCCACTTTCAGCAGTTGCCTTCGTGAAGACCCCACAACTAGAAGGTGGCTACAACAATTGCTTCACAATGTTGGAGTGAATAGAGTTCCTGCACTACAAGCTGGAGGAGGTTTCGATCATATGATTGTTACCTGA 972 0.4537 MSNLPQSLSMGAAFGGGGPPSSSGGTGAQGSGGGKDRKMASAEQLVLELSNPELRENALLELSKKRELFQDLAPLLWNSFGTIAALLQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLREDPTTRRWLQQLLHNVGVNRVPALQAGGGFDHMIVT 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4471g00002 323 MobiDBLite consensus disorder prediction 1 37 - -
Vium4471g00002 323 Pfam Cell differentiation family, Rcd1-like 45 303 - -
Vium4471g00002 323 PANTHER UNCHARACTERIZED 38 306 IPR007216 GO:0006402|GO:0030014
Vium4471g00002 323 SUPERFAMILY ARM repeat 47 278 IPR016024 -
Vium4471g00002 323 FunFam Cell differentiation protein RCD1 35 306 - -
Vium4471g00002 323 Gene3D - 34 304 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4471g00002 Vium-Chr4471 52448 61071 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Rcd1-like Vium4471g00002 Rcd1 3.5e-130 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4471g00002 K12606 - gmx:100784529 602.053