Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium446g00009 ATGGAACAGAGTGAAACGACGTCGGATTCAGTTCCGCGGAAATTGGCAAGGCAATTGGATTTCACAGTCATTCACAGAGATCATCCGCACCTGAAACTGCCTCCTCAATCACCACCGCCGCATTCACTTCTGCCACTATCATGGCATCCTCCCTTGCATTTAAATTTGCAGACACCGGGGCAACTGCCATGGTTATGTTTGGAATCACAGGAGCCACAGGAGCAACAGCCCTGGCTACATTCACTGCGACCGAAGCTAGTTTCGCCGGTTGGTCGATTTCCGCAGCCGGTGCAGAAACTTCCGGTTAAGGTGTTGCAAGAGGTGAAGTCAGAGTCTCCTATATCACAACGTCCATTTAATGTGGAATTAAAGGACACGACACCAAAGAAACAGAAACAATGTAACTGCAAAAATTCTAGATGCCTCAAATTGTACTGTGAGTGCTTTGCAGCTGGTATCTATTGTGATGGCTGCAACTGTGTAAATTGTCATAATAATGAGGATAATGAGGCTGCCAGACAGGAGGCAGTTGGAATAACATTGGAAAGAAACCCAAATGCTTTCAGACCAAAAATTGCCAGCAGTCCTCAAGAAAAACGAAATTCCAAGGAAAGTGAAGCTCAAGTTATAGGAAAGCACAATAAAGGATGTCACTGCAAGAAATCTGGTTGCCTTAAGAAGTATTGTGAGTGCTTCCAAGCCAATATCCTCTGCTCTGAAAATTGTAAATGCATGGACTGCAAGAATTTTGAAGGAAGTACTGAAAGAAGAGCAATTTTTCACAGAGAGTATAGTCTAGTTCACATCAAACAGGGAACTAATGCTGCTGTAACTGAAGTCGTTGGATCATCTGGCTATAGAAAATATATAACACCCAAGAGGAGAAAAATTCATGAATCGTTTTCGGGAAAGTCAACTGCGGATCAAACTGTTAACACGACAGGCCAATACCTACAGGAAACTGATCGAATGACTTCGTCATCTTCAACTCTGTCATATTCCTTTGTCTCTGACCATGTCAACACAAGAATTTCAGGGTCTTCAAGGTCTGTGTACCTGTCGGTATTGGCAGATGTCCTCCAGCCACAAAATGTGAAGAATCTCTGCTCACTTTTTGTTATTCTCTCAGGAGTATCTGCAAAGACTGATGCAGAAGCGGAAGGGAAAATAGATCGACAAACAAAAGCTGAGAACTCTAAAGCTTCTGTTGCTTCATCAGCTAAATCGTTACAGGAAACTAAAGATGGTCGCCAGCCCGTTTGTGATGATCACGTGAATAAAGCTGTGGCAAATGCAGTTGATATTGCAAATTATAATAGGCCATTGTCACCAGAAACACTGGCATTGATGTGTGATGAACAGGACAACATGTTTTTTGGAAATACTTCTGCCGATGGAGCTGCATATCAAAACATGATTCAAAAGTCATTAAATTCTGATGGAAGCTCTGATGCTTACGGAGAGCAGGAAAGACTTATAATGACCAAACTCTTGGATGTTCTTCGGGAACTCGTTACTCTTGGTAGCATAAAAGGTTAG 1539 0.4256 MEQSETTSDSVPRKLARQLDFTVIHRDHPHLKLPPQSPPPHSLLPLSWHPPLHLNLQTPGQLPWLCLESQEPQEQQPWLHSLRPKLVSPVGRFPQPVQKLPVKVLQEVKSESPISQRPFNVELKDTTPKKQKQCNCKNSRCLKLYCECFAAGIYCDGCNCVNCHNNEDNEAARQEAVGITLERNPNAFRPKIASSPQEKRNSKESEAQVIGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSTERRAIFHREYSLVHIKQGTNAAVTEVVGSSGYRKYITPKRRKIHESFSGKSTADQTVNTTGQYLQETDRMTSSSSTLSYSFVSDHVNTRISGSSRSVYLSVLADVLQPQNVKNLCSLFVILSGVSAKTDAEAEGKIDRQTKAENSKASVASSAKSLQETKDGRQPVCDDHVNKAVANAVDIANYNRPLSPETLALMCDEQDNMFFGNTSADGAAYQNMIQKSLNSDGSSDAYGEQERLIMTKLLDVLRELVTLGSIKG 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium446g00009 512 SMART CXC_2 129 169 IPR033467 -
Vium446g00009 512 SMART CXC_2 212 253 IPR033467 -
Vium446g00009 512 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 131 167 IPR005172 -
Vium446g00009 512 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 215 249 IPR005172 -
Vium446g00009 512 ProSiteProfiles CRC domain profile. 130 252 IPR005172 -
Vium446g00009 512 MobiDBLite consensus disorder prediction 397 413 - -
Vium446g00009 512 PANTHER TESMIN/TSO1-RELATED 34 502 IPR028307 -
Vium446g00009 512 MobiDBLite consensus disorder prediction 384 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium446g00009 Vium-Chr446 48942 53419 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium446g00009 13 511 CPP Transcription Factor Family AT4G29000 44.508 1.61e-125 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Vium446g00009 TCR 2.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium446g00009 - K21776 gmx:100811459 727.628