Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium446g00008 ATGGAACAGAGTGAAACGACGTCGGATTCAGTTCCGCGGAAATTGGCAAGGCAATTGGATTTCACAGTCATTCACAGAGATCATCCGCACCTGAAACTGCCTCCTCAATCACCACCGCCGCATTCACTTCTGCCACTATCATGGCATCCTCCCTTGCATTTAAATTTGCAGACACCGGGGCAACTGCCATGGTTATGTTTGGAATCACAGGAGCCACAGGAGCAACAGCCCTGGCTACATTCACTGCGACCGAAGCTAGTTTCGCCGGTTGGTCGATTTCCGCAGCCGGTGCAGAAACTTCCGGTTAAGGTGTTGCAAGAGGTGAAGTCAGAGTCTCCTATATCACAACGTCCATTTAATGTGGAATTAAAGGACACGACACCAAAGAAACAGAAACAATGTAACTGCAAAAATTCTAGATGCCTCAAATTGTACTGTGAGTGCTTTGCAGCTGGTATCTATTGTGATGGCTGCAACTGTGTAAATTGTCATAATAATGAGGATAATGAGGCTGCCAGACAGGAGGCAGTTGGAATAACATTGGAAAGAAACCCAAATGCTTTCAGACCAAAAATTGCCAGCAGTCCTCAAGAAAAACGAAATTCCAAGGAAAGTGAAGCTCAAGTTATAGGAAAGCACAATAAAGGATGTCACTGCAAGAAATCTGGTTGCCTTAAGAAGTATTGTGAGTGCTTCCAAGCCAATATCCTCTGCTCTGAAAATTGTAAATGCATGGACTGCAAGAATTTTGAAGGAAGTACTGAAAGAAGAGCAATTTTTCACAGAGAGTATAGTCTAGTTCACATCAAACAGGGAACTAATGCTGCTGTAACTGAAGTCGTTGGATCATCTGGCTATAGAAAATATATAACACCCAAGAGGAGAAAAATTCATGAATCGTTTTCGGGAAAGTCAACTGCGGATCAAACTGTTAACACGACAGGCCAATACCTACAGGAAACTGATCGAATGACTTCGTCATCTTCAACTCTGTCATATTCCTTTGTCTCTGACCATGTCAACACAAGAATTTCAGGGTCTTCAAGGTCGGTATTGGCAGATGTCCTCCAGCCACAAAATGTGAAGAATCTCTGCTCACTTTTTGTTATTCTCTCAGGAGTATCTGCAAAGACTGATGCAGAAGCGGAAGGGAAAATAGATCGACAAACAAAAGCTGAGAACTCTAAAGCTTCTGTTGCTTCATCAGCTAAATCGTTACAGGAAACTAAAGATGGTCGCCAGCCCGTTTGTGATGATCACGTGAATAAAGCTGTGGCAAATGCAGTTGATATTGCAAATTATAATAGGCCATTGTCACCAGAAACACTGGCATTGATGTGTGATGAACAGGACAACATGTTTTTTGGAAATACTTCTGCCGATGGAGCTGCATATCAAAACATGATTCAAAAGTCATTAAATTCTGATGGAAGCTCTGATGCTTACGGAGAGCAGGAAAGACTTATAATGACCAAACTCTTGGATGTTCTTCGGGAACTCGTTACTCTTGGTAGCATAAAAGGTTAG 1527 0.425 MEQSETTSDSVPRKLARQLDFTVIHRDHPHLKLPPQSPPPHSLLPLSWHPPLHLNLQTPGQLPWLCLESQEPQEQQPWLHSLRPKLVSPVGRFPQPVQKLPVKVLQEVKSESPISQRPFNVELKDTTPKKQKQCNCKNSRCLKLYCECFAAGIYCDGCNCVNCHNNEDNEAARQEAVGITLERNPNAFRPKIASSPQEKRNSKESEAQVIGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSTERRAIFHREYSLVHIKQGTNAAVTEVVGSSGYRKYITPKRRKIHESFSGKSTADQTVNTTGQYLQETDRMTSSSSTLSYSFVSDHVNTRISGSSRSVLADVLQPQNVKNLCSLFVILSGVSAKTDAEAEGKIDRQTKAENSKASVASSAKSLQETKDGRQPVCDDHVNKAVANAVDIANYNRPLSPETLALMCDEQDNMFFGNTSADGAAYQNMIQKSLNSDGSSDAYGEQERLIMTKLLDVLRELVTLGSIKG 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium446g00008 508 PANTHER TESMIN/TSO1-RELATED 34 498 IPR028307 -
Vium446g00008 508 SMART CXC_2 129 169 IPR033467 -
Vium446g00008 508 SMART CXC_2 212 253 IPR033467 -
Vium446g00008 508 ProSiteProfiles CRC domain profile. 130 252 IPR005172 -
Vium446g00008 508 MobiDBLite consensus disorder prediction 393 409 - -
Vium446g00008 508 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 215 249 IPR005172 -
Vium446g00008 508 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 131 167 IPR005172 -
Vium446g00008 508 MobiDBLite consensus disorder prediction 380 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium446g00008 Vium-Chr446 48941 53419 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium446g00008 13 507 CPP Transcription Factor Family AT4G29000 43.389 1.53e-123 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Vium446g00008 TCR 2.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium446g00008 - K21776 gmx:100811459 718.383