Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4469g00009 ATGAATGGAAAAGGACATAGATTTGTGAGGTTTGAAGATTGGCAATCGGAGTCATCTTTTAGCATAGAGCAAAACGATCACAAAAGAAGACCAAGTGTGTTTGAAGTTTTGAAGAGTATAGGAAGAAGGGTTGAGGGTAGTTCAGAGAAGATGAAGAACTTAAGAAGAGTTTCAGCTGTTCATCCCTTAAGTGATGGACAGAAAAAGCTGCCACCTAGGAAGAAAATTCTTGATCCACAGAGTTCAATGCTTCAGAAATGGAACAAAATCTTTGTAATTTCGTGTGTGTTGGCAGTCTCTGTGGACCCGTTCTTCTTTTACATTCCAGTGATTGGTAATGAGAAAAAATGCCTTGAGTTGAGTGGGTCATTGCAGATCACTGCCAGTGTTTTTCGCACCTTCTTTGATCTATTCTACATTCTTCGCATAATCTTTCAGTTTAAGACAGGGTTTATTCCCCCTTCTTCTCGTGTTTTTGGAAGGGGTGAGCTCGTTGATGATCCTTTGGCTATATCGAAAAGATACTTAACTTCATACTTCATCATCGACATTCTATCAATTATTCCACTTCCACAGGTGATTGTTTTAGCCATACATCCAAACATGAAAACAGATCCATTTATAGCAAAGGATTTGTTGAAGTATTCTGTATTAATCCAGTATGTGCCAAGGCTTCTGCGGATCCATCCACTGTTCAAAGAAGTAACTAGAACTTCTGGCATATTGACTGATACAGCAGGGGCTGGAGCTACTTATAATCTTTTTCTTTATATGCTAGCAAGTCATGTAGTTGGAGCTTTCTGGTATTTGCTCTCAGTAGAGTCAGAGCTGCGTTGCTGGCGCGAAAAGGTGAAGGGTGTAGACTTGAGTTGTAGAAACCGCATCGCAGAAGACATTTCAGCTCTCAATAAATCTTGTTCTTTGGTGGACCCTGATGATATCAAAGACCGAGAAAGCTACAACTTTGGAATCTTTTTTGATGCTTTACATTCCGGTGTGGTAAAATCAACCACAGATTTTCCTAAGAAGTTCTTCTACTGCTTTTGGTGGGGTTTGCGCAATTTAAGTTCTCTTGGACAAAATCTCAAGACAAGTACTTATGTACCAGAGATAATATTTGCAATCTTCATTTCCATCTTTGGATTAGTTTTATTCTCGTTACTTATTGGAAACATGCAGAAATATTTGCAATCTACAACTGTTCGAGTGGAGGAGATGAGAGTGAAGAGACAGGACGCAGAACAGTGGATGTCCCACCGTATGCTACCTGAGAACTTGAAGGACAGAATTAGACAATATGAACAGTATCAATGGCAAGAAAATAGGGGTGTTGAGGAGGAGGCATTGATTCGTAACCTTCCTAAAGATCTCAGAAGGGACATAAAGCGTCACCTTTGTCTAGCTTTGGTTATAAAGGTGCCAATGTTTGAGAAAATGGATGGGCAGTTGTTGGATGCAATTTGCACTAGACTGAAGCCAGTCCTTTATACTGAGAAGAGCCAAATTTTTCGTGAAGGAGACCCAGTTGATGAGATGCTTTTCATTATGCGTGGAAAAGTCTCTACTGTGACGACAAATGGTGGAAGAACTGGTTTCTTCAACTCCTTGTTTCTGGAAGCTGGTGCATTCTGCGGAGAGGAGCTTCTGACATGGGCCTTGGATCCTAACTCCTCCTCGAATCTTCCCATTTCAACTAGGACAGTGGAAACCATATCAGAAGTTGAAGCCTTTGCTCTCATGGCGGATGATTTGAAGCTTGTTGCCTCCCAATTTCGCCGTCTTAGCAGCAAGCAGCTCCAACACGCTTTCAGGTTCTATTCCTCACAGTGGAAGACATGGGCTGCATGTTTCATACAAGCAGCTTGGCGTCGATACTGGAAAAAGAAGGCTGAGAGGTCTTTGCACGTAGAAGAAGACAAGCTACAAGATGCTTTGACAAATGATGACGGCGCTACTCTGAGCCTTGGCGCAACCATATATGCATCAAGGTTTGCTGCCAATGCACTGCGAAACCTGAGAGAAAACAACAGACAGAATAGAATGCAACAGAGACTACTGCCTCTGCTACCTCCAAAGCCAGCCGAGCCAGACTTCACTTCTCTGAAACACTAA 2112 0.42 MNGKGHRFVRFEDWQSESSFSIEQNDHKRRPSVFEVLKSIGRRVEGSSEKMKNLRRVSAVHPLSDGQKKLPPRKKILDPQSSMLQKWNKIFVISCVLAVSVDPFFFYIPVIGNEKKCLELSGSLQITASVFRTFFDLFYILRIIFQFKTGFIPPSSRVFGRGELVDDPLAISKRYLTSYFIIDILSIIPLPQVIVLAIHPNMKTDPFIAKDLLKYSVLIQYVPRLLRIHPLFKEVTRTSGILTDTAGAGATYNLFLYMLASHVVGAFWYLLSVESELRCWREKVKGVDLSCRNRIAEDISALNKSCSLVDPDDIKDRESYNFGIFFDALHSGVVKSTTDFPKKFFYCFWWGLRNLSSLGQNLKTSTYVPEIIFAIFISIFGLVLFSLLIGNMQKYLQSTTVRVEEMRVKRQDAEQWMSHRMLPENLKDRIRQYEQYQWQENRGVEEEALIRNLPKDLRRDIKRHLCLALVIKVPMFEKMDGQLLDAICTRLKPVLYTEKSQIFREGDPVDEMLFIMRGKVSTVTTNGGRTGFFNSLFLEAGAFCGEELLTWALDPNSSSNLPISTRTVETISEVEAFALMADDLKLVASQFRRLSSKQLQHAFRFYSSQWKTWAACFIQAAWRRYWKKKAERSLHVEEDKLQDALTNDDGATLSLGATIYASRFAANALRNLRENNRQNRMQQRLLPLLPPKPAEPDFTSLKH 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4469g00009 703 Gene3D Jelly Rolls 473 593 IPR014710 -
Vium4469g00009 703 ProSiteProfiles cAMP/cGMP binding motif profile. 475 559 IPR000595 -
Vium4469g00009 703 Pfam Ion transport protein 87 403 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vium4469g00009 703 MobiDBLite consensus disorder prediction 680 703 - -
Vium4469g00009 703 CDD CAP_ED 475 606 IPR000595 -
Vium4469g00009 703 Gene3D - 89 399 - -
Vium4469g00009 703 Gene3D Helix hairpin bin 402 466 - -
Vium4469g00009 703 Pfam Cyclic nucleotide-binding domain 496 585 IPR000595 -
Vium4469g00009 703 SMART cnmp_10 475 606 IPR000595 -
Vium4469g00009 703 SUPERFAMILY cAMP-binding domain-like 404 600 IPR018490 -
Vium4469g00009 703 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 63 698 - -
Vium4469g00009 703 SUPERFAMILY Voltage-gated potassium channels 78 397 - -
Vium4469g00009 703 Coils Coil 627 647 - -
Vium4469g00009 703 FunFam Cyclic nucleotide-gated ion channel 1 402 466 - -
Vium4469g00009 703 FunFam Cyclic nucleotide-gated ion channel 1 473 591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4469g00009 Vium-Chr4469 22663 27206 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4469g00009 1 700 Ion Channels AT5G53130 62.865 0.0 890
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4469g00009 K05391 - gmx:100797784 1134.78