Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4464g00003 ATGGCGGCTGGGAGACATGGCGGTTACCGCGAAAACGACTTCAGAGAGCGCGAATCGAAACTCGAAGGTTCTAGACGCGGGCTTGCCAATTCGAAAGAGGATTACGATCGTGTTAGGAATGGTGGCGGTGATGTTGTGAGGGGAGGGTCCAGGGACAGGGTTAGGGTGAGGCAGAGGGATATTAAGGAGAGGGAAGGTGTTAATGGTGGGTACCGATCATCTTCGAGTAGGAGTGACTCTGGCAGCAGTGGCCTTGGTCCTCGCCGATGTGGTTTCTCTATCAAAGCAATGGATAGAGAGCCTGGTGAGCTTTCCAGTGAGAGTGGTTCTGATGATGCAATTGAGTCAGAATCTAGGGCGAAAGACTCCGAGGTTTCCATGTTGGAAGAAACAAGAACCCGATCCCCACCGGTGCCGGACAGGAAAAGAAAATTCTCGCCCATAGTGTGGGATCAGGATGACAAAGATGTCAGTGAGTCATCCAGAGTTAGGGTTTCTGCCTCTACGGTGGTGACAGCAGCACTTCCTCCTCCGCCTCCATTGCCAAAGGTATTCCATCAGTCACCGTCACCAAATGCTCCAAATGGTGTTGTACAAATACATCCTGTCAAGAACAAGGAGACCGAGGATCTCCAGTTGAATGCAGCATCTAAGATTACCTTGCCCTCTCCTTCTGGTTTGCATTCATCACCTCCGAAAGGGAGGTGGGGTAATGATCAGGAAACTGATCATCTAGAAGGTGAAGTTTATGTTCCAGCTCGCAATATATCGTCTTCAAGATGGGCAGCTGGAGATAACTCTCCTGGTGATGAGGGTGAGATCCTCAATGATGAGGAGATGCCCAAACGAAGGAGGAAGGCGTCTCCTGAGTTCTTGGATGGCAGACCAAGGAACAAGTTATTGAGCCCTGTGGAATCCAAGATTGAAGGTATTGAAGGAGCTAGAGCCAGATCATCTGAATCTGAAGAAAGAGGTGTCCGTGGGAGAACTTCCAGCAGTGATGATCATCCTGGTATGGAGTCAGAGAAGGATGACTTCATGGAGGTTGACCCTCAGGGTGGGAAAAGTGAAACAAGTGTCAGTCACTCCGAAACGGAATATGAAGATGAAGACGATGGTAGGGAGACTCCAGAACCTCCTTCTCCACCCCAAAGAACTGTCAACATGCTTCAGGGTTGTAGAAGTGTTGATGAGTTTGAGAGACTTAACAAGATAGATGAAGGAACATATGGTGTTGTATATAGGGCTAGGGATAAAAAGACCGGAGAAATTGTAGCATTGAAGAAGGTCAAGATGGAGAAGGAAAAGGAGGGCTTCCCACTGACTTCTCTTAGGGAAATAAATATTCTTCTTTCTTTTCACCACCCATCCATAGTTGATGTTAAAGAAGTAGTGGTAGGAAGTAGCCTTGATAGTATTTTCATGGTCATGGAATATATGGAGCATGACCTTAAAGGACTAATGGAAGCAATGAAGCAACCTTTCAGCCAGAGTGAAGTGAAGTGCTTGATGATCCAGCTTTTAGAAGGTGTGAAGTATCTTCATGACAACTGGGTGCTTCATAGGGATTTAAAGACATCAAATCTGCTTTTAAATAATAGGGGTGAGCTCAAAATTTGTGATTTTGGCTTGGCCCGTCAGTATGGGAGTCCTTTAAAGCCATATACACACCTGGTGGTTACTCTTTGGTACAGGGCACCTGAACTCCTTCTGGGGTCAAAACAGTATTCAACAGCCATAGACATGTGGTCTCTAGGCTGTATAATGGCTGAGCTATTATCTAAGGAACCACTGTTTAATGGGAGAACGGAGTTTGACCAACTTGACAAGATTTTTCGGATTCTAGGCACCCCTAATGAAGCAATATGGCCTGGTTTCTCAAAATTACCTGGGGTCAAGGTCAATTTTGTCAAACACCAGTACAACCTCCTGCGGAAAAAATTTCCTGCGACATCATTCACTGGATCTCCTGTTCTTTCTGATTCAGGATTTGATTTGTTGAACAAACTTCTAACATATGACCCTGAAAAGCGGATCACTGCTGAAGCTGCTCTAAATCATGAGTGGTTTCGTGAGGTCCCTCTCCCCAAAAGTAAAGAATTCATGCCTACATTTCCTGCTCAACACGCTCAGGACAGGCGTGTGCGGAGAATATACAAGAGTCCAGATCCTTTAGAGGAGCAGCGCCGGAAGGAGTTGCAGCAGGGTGAATCGGGGACTGGTGGAATTTTTGGCTAA 2238 0.4647 MAAGRHGGYRENDFRERESKLEGSRRGLANSKEDYDRVRNGGGDVVRGGSRDRVRVRQRDIKEREGVNGGYRSSSSRSDSGSSGLGPRRCGFSIKAMDREPGELSSESGSDDAIESESRAKDSEVSMLEETRTRSPPVPDRKRKFSPIVWDQDDKDVSESSRVRVSASTVVTAALPPPPPLPKVFHQSPSPNAPNGVVQIHPVKNKETEDLQLNAASKITLPSPSGLHSSPPKGRWGNDQETDHLEGEVYVPARNISSSRWAAGDNSPGDEGEILNDEEMPKRRRKASPEFLDGRPRNKLLSPVESKIEGIEGARARSSESEERGVRGRTSSSDDHPGMESEKDDFMEVDPQGGKSETSVSHSETEYEDEDDGRETPEPPSPPQRTVNMLQGCRSVDEFERLNKIDEGTYGVVYRARDKKTGEIVALKKVKMEKEKEGFPLTSLREINILLSFHHPSIVDVKEVVVGSSLDSIFMVMEYMEHDLKGLMEAMKQPFSQSEVKCLMIQLLEGVKYLHDNWVLHRDLKTSNLLLNNRGELKICDFGLARQYGSPLKPYTHLVVTLWYRAPELLLGSKQYSTAIDMWSLGCIMAELLSKEPLFNGRTEFDQLDKIFRILGTPNEAIWPGFSKLPGVKVNFVKHQYNLLRKKFPATSFTGSPVLSDSGFDLLNKLLTYDPEKRITAEAALNHEWFREVPLPKSKEFMPTFPAQHAQDRRVRRIYKSPDPLEEQRRKELQQGESGTGGIFG 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4464g00003 745 MobiDBLite consensus disorder prediction 217 388 - -
Vium4464g00003 745 ProSiteProfiles Protein kinase domain profile. 399 690 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4464g00003 745 CDD STKc_CDC2L1 393 690 IPR045267 GO:0004674|GO:0005524|GO:0006468
Vium4464g00003 745 ProSitePatterns Serine/Threonine protein kinases active-site signature. 519 531 IPR008271 GO:0004672|GO:0006468
Vium4464g00003 745 MobiDBLite consensus disorder prediction 275 293 - -
Vium4464g00003 745 MobiDBLite consensus disorder prediction 8 67 - -
Vium4464g00003 745 SMART serkin_6 399 690 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4464g00003 745 MobiDBLite consensus disorder prediction 93 161 - -
Vium4464g00003 745 MobiDBLite consensus disorder prediction 69 83 - -
Vium4464g00003 745 MobiDBLite consensus disorder prediction 720 745 - -
Vium4464g00003 745 SUPERFAMILY Protein kinase-like (PK-like) 391 696 IPR011009 -
Vium4464g00003 745 FunFam Cyclin-dependent kinase G-2 482 721 - -
Vium4464g00003 745 MobiDBLite consensus disorder prediction 310 351 - -
Vium4464g00003 745 Gene3D Phosphorylase Kinase; domain 1 384 481 - -
Vium4464g00003 745 Gene3D Transferase(Phosphotransferase) domain 1 482 721 - -
Vium4464g00003 745 PANTHER CELL DIVISION PROTEIN KINASE 397 696 - -
Vium4464g00003 745 Pfam Protein kinase domain 399 690 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4464g00003 745 MobiDBLite consensus disorder prediction 173 187 - -
Vium4464g00003 745 FunFam cyclin-dependent kinase G-2 isoform X1 384 481 - -
Vium4464g00003 745 MobiDBLite consensus disorder prediction 1 198 - -
Vium4464g00003 745 MobiDBLite consensus disorder prediction 720 734 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4464g00003 Vium-Chr4464 19450 23567 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4464g00003 390 735 Core Cell Cycle Gene Families AT5G10270 44.751 6.22e-94 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Vium4464g00003 Pkinase 2e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4464g00003 K08818 - gmx:100792524 1249.19