Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4464g00001 ATGGCGGCTGGGAGACATGGCGGTTACCGCGAAAACGACTTCAGAGAGCGCGAATCGAAACTCGAAGGTTCTAGACGCGGGCTTGCCAATTCGAAAGAGGATTACGATCGTGTTAGGAATGGTGGCGGTGATGTTGTGAGGGGAGGGTCCAGGGACAGGGTTAGGGTGAGGCAGAGGGATATTAAGGAGAGGGAAGGTGTTAATGGTGGGTACCGATCATCTTCGAGTAGGAGTGACTCTGGCAGCAGTGGCCTTGGTCCTCGCCGATGTGGTTTCTCTATCAAAGCAATGGATAGAGAGCCTGGTGAGCTTTCCAGTGAGAGTGGTTCTGATGATGCAATTGAGTCAGAATCTAGGGCGAAAGACTCCGAGGTTTCCATGTTGGAAGAAACAAGAACCCGATCCCCACCGGTGCCGGACAGGAAAAGAAAATTCTCGCCCATAGTGTGGGATCAGGATGACAAAGATGTCAGTGAGTCATCCAGAGTTAGGGTTTCTGCCTCTACGGTGGTGACAGCAGCACTTCCTCCTCCGCCTCCATTGCCAAAGGTATTCCATCAGTCACCGTCACCAAATGCTCCAAATGGTGTTGTACAAATACATCCTGTCAAGAACAAGGAGACCGAGGATCTCCAGTTGAATGCAGCATCTAAGATTACCTTGCCCTCTCCTTCTGGTTTGCATTCATCACCTCCGAAAGGGAGGTGGGGTAATGATCAGGAAACTGATCATCTAGAAGGTGAAGTTTATGTTCCAGCTCGCAATATATCGTCTTCAAGATGGGCAGCTGGAGATAACTCTCCTGGTGATGAGGGTGAGATCCTCAATGATGAGGAGATGCCCAAACGAAGGAGGAAGGCGTCTCCTGAGTTCTTGGATGGCAGACCAAGGAACAAGTTATTGAGCCCTGTGGAATCCAAGATTGAAGGTATTGAAGGAGCTAGAGCCAGATCATCTGAATCTGAAGAAAGAGGTGTCCGTGGGAGAACTTCCAGCAGTGATGATCATCCTGGTATGGAGTCAGAGAAGGATGACTTCATGGAGGTTGACCCTCAGGGTGGGAAAAGTGAAACAAGTGTCAGTCACTCCGAAACGGAATATGAAGATGAAGACGATGGTAGGGAGACTCCAGAACCTCCTTCTCCACCCCAAAGAACTGTCAACATGCTTCAGGGTTGTAGAAGTGTTGATGAGTTTGAGAGACTTAACAAGATAGATGAAGGAACATATGGTGTTGTATATAGGGCTAGGGATAAAAAGACCGGAGAAATTGTAGCATTGAAGAAGGTCAAGATGGAGAAGGAAAAGGAGGGCTTCCCACTGACTTCTCTTAGGGAAATAAATATTCTTCTTTCTTTTCACCACCCATCCATAGTTGATGTTAAAGAAGTAGTGGTAGGAAGTAGCCTTGATAGTATTTTCATGGTCATGGAATATATGGAGCATGACCTTAAAGGACTAATGGAAGCAATGAAGCAACCTTTCAGCCAGAGTGAAGTGAAGTGCTTGATGATCCAGCTTTTAGAAGGTGTGAAGTATCTTCATGACAACTGGGTGCTTCATAGGGATTTAAAGACATCAAATCTGCTTTTAAATAATAGGGGTGAGCTCAAAATTTGTGATTTTGGCTTGGCCCGTCAGTATGGGAGTCCTTTAAAGCCATATACACACCTGGTGGTTACTCTTTGGTACAGGGCACCTGAACTCCTTCTGGGGTCAAAACAGTATTCAACAGCCATAGACATGTGGTCTCTAGGCTGTATAATGGCTGAGCTATTATCTAAGGAACCACTGTTTAATGGGAGAACGGAGTTTGACCAACTTGACAAGATTTTTCGGATTCTAGGCACCCCTAATGAAGCAATATGGCCTGGTTTCTCAAAATTACCTGGGGTCAAGGTCAATTTTGTCAAACACCAGCTTCCAGCTTTGGGTGGTTCTGGTACAACCTCCTGCGGAAAAAATTTCCTGCGACATCATTCACTGGATCTCCTGTTCTTTCTGATTCAGGATTTGATTTGTTGA 2025 0.4632 MAAGRHGGYRENDFRERESKLEGSRRGLANSKEDYDRVRNGGGDVVRGGSRDRVRVRQRDIKEREGVNGGYRSSSSRSDSGSSGLGPRRCGFSIKAMDREPGELSSESGSDDAIESESRAKDSEVSMLEETRTRSPPVPDRKRKFSPIVWDQDDKDVSESSRVRVSASTVVTAALPPPPPLPKVFHQSPSPNAPNGVVQIHPVKNKETEDLQLNAASKITLPSPSGLHSSPPKGRWGNDQETDHLEGEVYVPARNISSSRWAAGDNSPGDEGEILNDEEMPKRRRKASPEFLDGRPRNKLLSPVESKIEGIEGARARSSESEERGVRGRTSSSDDHPGMESEKDDFMEVDPQGGKSETSVSHSETEYEDEDDGRETPEPPSPPQRTVNMLQGCRSVDEFERLNKIDEGTYGVVYRARDKKTGEIVALKKVKMEKEKEGFPLTSLREINILLSFHHPSIVDVKEVVVGSSLDSIFMVMEYMEHDLKGLMEAMKQPFSQSEVKCLMIQLLEGVKYLHDNWVLHRDLKTSNLLLNNRGELKICDFGLARQYGSPLKPYTHLVVTLWYRAPELLLGSKQYSTAIDMWSLGCIMAELLSKEPLFNGRTEFDQLDKIFRILGTPNEAIWPGFSKLPGVKVNFVKHQLPALGGSGTTSCGKNFLRHHSLDLLFFLIQDLIC 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4464g00001 674 MobiDBLite consensus disorder prediction 217 388 - -
Vium4464g00001 674 FunFam cyclin-dependent kinase G-2 isoform X1 384 481 - -
Vium4464g00001 674 ProSitePatterns Serine/Threonine protein kinases active-site signature. 519 531 IPR008271 GO:0004672|GO:0006468
Vium4464g00001 674 CDD STKc_CDC2L1 393 640 IPR045267 GO:0004674|GO:0005524|GO:0006468
Vium4464g00001 674 MobiDBLite consensus disorder prediction 275 293 - -
Vium4464g00001 674 MobiDBLite consensus disorder prediction 8 67 - -
Vium4464g00001 674 Gene3D Transferase(Phosphotransferase) domain 1 482 660 - -
Vium4464g00001 674 SMART serkin_6 399 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4464g00001 674 MobiDBLite consensus disorder prediction 93 161 - -
Vium4464g00001 674 MobiDBLite consensus disorder prediction 69 83 - -
Vium4464g00001 674 Pfam Protein kinase domain 399 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4464g00001 674 SUPERFAMILY Protein kinase-like (PK-like) 391 637 IPR011009 -
Vium4464g00001 674 FunFam Cyclin-dependent kinase G-2 482 671 - -
Vium4464g00001 674 MobiDBLite consensus disorder prediction 310 351 - -
Vium4464g00001 674 MobiDBLite consensus disorder prediction 173 187 - -
Vium4464g00001 674 PANTHER CELL DIVISION PROTEIN KINASE 397 631 - -
Vium4464g00001 674 MobiDBLite consensus disorder prediction 1 198 - -
Vium4464g00001 674 Gene3D Phosphorylase Kinase; domain 1 384 481 - -
Vium4464g00001 674 ProSiteProfiles Protein kinase domain profile. 399 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4464g00001 Vium-Chr4464 19447 22734 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4464g00001 390 630 Core Cell Cycle Gene Families AT5G10270 51.562 6.46e-85 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Vium4464g00001 Pkinase 4.1e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4464g00001 K08818 - gmx:100792524 1037.33