Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4460g00002 ATGGAGGAAAAAAAAGACAAAGACAACGAAGGAACCTCAGAGGGAACCGCTTCCGACACCCTCTCCATGTTTCGCCCTGCGCTTTCCCTTCTCAAGCGTCGCAGCTTTATCGCCTGTCGTGATTTCACTCGCAAGATCGTCAGATCCGACTCCAACGCCTCTCTGCAAATCGACCAAATCCTTGCGGTTGCCGATGTTCTTGCCGCCGCAGAGCGCCGCCACGACCCACTTGACTGGTACTCCATCCTGCGCCTCAGTTCTGGAGACGTTGCTGCTGACCGTGATTTCGTACGACAACAGTTCAAGATCTTAGTGCGCCTCCTGGACCCTAACAAGAATAAGTTTCCCTTCGCAGACGAGGCCCTCATGCGCGTGCGCGAAGCTTGGTGTGTTCTCTCTGATCCCACACTCAAGGCAAGTTTTGACAGAAAGGTTAAAGACGAGGTTTCTTCGTTTTGGACAATGTGCCCCTACTGCTGGTACCTCCACGAATACCAGAGGTATTACGAGGATTGCTCTTTGAGGTGCGCCAATTGCCAGAAGACGTTTCACGGCACCGAGGTGAAGCCCCCTCCGCCGGAGTCGGTGGTGGCGGGGAAGGAGGAGTACTACTGTTACCACGTGAGTTTTCCGCTCAGGTATCCCGTTGGTGACCGGCGTAGCTTTGTTGACGAGGAGAATGGGATGCGGAAGAGGTTGAGGGTTAAAACAGTGGCTAATAGGACTAGAACGAAAGGGGTTGTTCATGTCCTTGCTGACTCCGATTCAGATGGGGAGGAGAAAGATGAGGGAAAATAG 798 0.5326 MEEKKDKDNEGTSEGTASDTLSMFRPALSLLKRRSFIACRDFTRKIVRSDSNASLQIDQILAVADVLAAAERRHDPLDWYSILRLSSGDVAADRDFVRQQFKILVRLLDPNKNKFPFADEALMRVREAWCVLSDPTLKASFDRKVKDEVSSFWTMCPYCWYLHEYQRYYEDCSLRCANCQKTFHGTEVKPPPPESVVAGKEEYYCYHVSFPLRYPVGDRRSFVDEENGMRKRLRVKTVANRTRTKGVVHVLADSDSDGEEKDEGK 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4460g00002 265 CDD DnaJ 78 134 IPR001623 -
Vium4460g00002 265 SMART dnaj_3 77 137 IPR001623 -
Vium4460g00002 265 Gene3D DnaJ domain 77 151 IPR036869 -
Vium4460g00002 265 Pfam DnaJ domain 78 142 IPR001623 -
Vium4460g00002 265 SUPERFAMILY Chaperone J-domain 73 144 IPR036869 -
Vium4460g00002 265 ProSiteProfiles dnaJ domain profile. 78 145 IPR001623 -
Vium4460g00002 265 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 21 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4460g00002 Vium-Chr4460 19569 20701 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4460g00002 27 229 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 36.404 2.80e-41 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4460g00002 - - var:108337473 509.22