Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium445g00001 ATGGTAAAAACAATGGCCTATAGCCAGCAGAAGAAGACGGTCGTCCATACCGAAGCTAAAGTGATACCGACAAATTTTGATTCATGTATGCAACATCCTTCTGCTTATAATTCCAGATCTGCATTCAATGAATTAGCTGGCTTCAATCAATTAAATCTGAGTTGCAACCTTAACTATATGGAACAACAAACATCAGGTGTTGGAAGACAGAGTCACGTTAATCCCAACATGAATCCATCAAGTGCCTCAAACATGCCTCAACTGAAAACAGGTGTAGGCAAAATTCTTGAACAGAATCAGAGTTCTGGTGGCGGTTCACTATTTGGAGGAATCCCAATATGTGGTGGGAGTAATCTTTTGAGGACAAATATGATTAACTGCTCTGTTTCAAATTCTCCCAAAGTACCCACTTCTGAATTTTCTGGAAGTCACAAGATTGAGTTTGGGCTTCAAAATAACAATTCAACAACTGATACTGGGCTCTGTTCTGTGCCTAATTTCTGTAACCAATCAGTTACCAGTCACATGAATCAAGAAAACTCTGCTCAGAAGAACCTTCCCATTGATTTAAAGCATGCTTGTGATGCTTTCGTTTCAACTGATCAAAGGATACATGATGATTTGCTTCATACCGCTCTTAATATTCCGTCTCTTCATCTTGAGGAGAATGAGCCTATGGGTGATAATATCCCTGGTTTTGTTCAAGATTGCCTCAATAAAGATTTTACTAGTGTGGTGAAAATGAATGTTAAGCATGAAGAGACTTATAATCAACTTCCATCAGGGGATGATCTCTTCGATGTTTTAGGCGTGGATTTGAAAAGGAAACTACTCAATGGAAACTGGGATAATTTGCTTGCAAGTGATTCAGAGGCCAACAGAGAGCGTCTAGATAAAAAGGCAACATGCATGAATTTGCCTGGTGTACGTCCTGATAACAGCTATTCAGTTAAGGAAGCAATATCAGACAGTGGGATCTTCTCAGGAACGGGCACTGACCACCTCTTAGATGCTGTTGTTTCAAAAGCTCAATCTGCTCCAAAACAGAGTTCTGATGAAATGTCTTGCAGGACAACATTGACAAGGGTTAGTACTGCCTCCGTTTCCTCTCCTGCCTGCAACCAGGTTCTGTCTGATCATGTCCTGAAGGGATTGTTTGATTTTCCCAAGAACGGGGCTAAAAGAGCTGCTGGGGAAACCAGTTCTCTTAGGTCTGGGTGCAGCAAGGATGATGCTGGAAACTGCTCTCAAATGACTTCCATATATGGTTCTAAGCTTAGTTCATGGGTTGAGAATGGTAGTAGTGTGAAACGTGAAAGCAGCGTTTCAACTGGATACTCTAAGAGACCAGAAGAAGTTTGCAAATCAAATAGGAAAAGGCTTAAACCTGGAGAGAATCCTAGACCTCGCCCTAAAGATCGCCAAATGATTCAAGATCGTGTTAAAGAATTAAGGGAAATTGTGCCAAACGGAGCAAAATGTAGCATAGATGCACTTCTGGAAAAGACCATCAAGCATATGCTTTTCCTGCAAAGTGTAACAAAGCATGCTGACAAGCTGAAACAGACAGGGGAATCTAAGATTGTTAGTAAAGAAGGTGGGTTGCTATTAAAAGACAACTTTGAAGGAGGAGCTACATGGGCATATGAGGTTGGCTCGCAATCAATGGTTTGTCCAATCATTGTTGAGGATCTTAATCCACCTCGTCAGATGCTAGTAGAGATGCTTTGTGAGGAACGGGGTTTCTTTCTGGAAATAGCTGACTTAATCAGAGGATTAGGATTAACCATCTTGAAGGGAGTTATGGAAGCTCGTAATGACAAGATCTGGGCACGCTTTGCAGTTGAGGCCAACAGGGACGTGACGAGGATGGAAATATTTATGTCACTGGTTCGTCTTTTGGATCAAACAGTGAAGGGTGGTGCATCTTCATCGAATGCAACTGATAATAACAACGTGATGATGTATCATCATTCTTTCCCACAAGCTACCCAGATAGCAGCAACTGGTAGACCTAGTAGTTTGCAATGA 2031 0.4151 MVKTMAYSQQKKTVVHTEAKVIPTNFDSCMQHPSAYNSRSAFNELAGFNQLNLSCNLNYMEQQTSGVGRQSHVNPNMNPSSASNMPQLKTGVGKILEQNQSSGGGSLFGGIPICGGSNLLRTNMINCSVSNSPKVPTSEFSGSHKIEFGLQNNNSTTDTGLCSVPNFCNQSVTSHMNQENSAQKNLPIDLKHACDAFVSTDQRIHDDLLHTALNIPSLHLEENEPMGDNIPGFVQDCLNKDFTSVVKMNVKHEETYNQLPSGDDLFDVLGVDLKRKLLNGNWDNLLASDSEANRERLDKKATCMNLPGVRPDNSYSVKEAISDSGIFSGTGTDHLLDAVVSKAQSAPKQSSDEMSCRTTLTRVSTASVSSPACNQVLSDHVLKGLFDFPKNGAKRAAGETSSLRSGCSKDDAGNCSQMTSIYGSKLSSWVENGSSVKRESSVSTGYSKRPEEVCKSNRKRLKPGENPRPRPKDRQMIQDRVKELREIVPNGAKCSIDALLEKTIKHMLFLQSVTKHADKLKQTGESKIVSKEGGLLLKDNFEGGATWAYEVGSQSMVCPIIVEDLNPPRQMLVEMLCEERGFFLEIADLIRGLGLTILKGVMEARNDKIWARFAVEANRDVTRMEIFMSLVRLLDQTVKGGASSSNATDNNNVMMYHHSFPQATQIAATGRPSSLQ 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium445g00001 676 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 461 510 IPR011598 GO:0046983
Vium445g00001 676 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 10 670 IPR043561 GO:0003700|GO:0006355
Vium445g00001 676 MobiDBLite consensus disorder prediction 451 476 - -
Vium445g00001 676 MobiDBLite consensus disorder prediction 433 447 - -
Vium445g00001 676 MobiDBLite consensus disorder prediction 433 476 - -
Vium445g00001 676 CDD bHLH_AtLHW_like 465 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium445g00001 Vium-Chr445 17633 21335 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium445g00001 263 655 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 53.518 4.51e-123 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium445g00001 - - gmx:100812899 1078.54