Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4458g00001 ATGAATTCCCCACCCAACCTCTTCGTCTCTTTTCTTCTTCTTCTTCTTCTCTTCTTCACTGTCTTCTCCGTTTCTTCCTCCGCCTCACTCCCCGAGCTTCGATCTCTCATGGAATTCAAGAAGGGGATAACTCAAGATCCCCACAATCTTCTCGACTCCTGGGCTCCGGCCGCTGTCGCCGAGTCCACCGCCGCCTGTCCTTCTACTTGGCAGGGCATTCTTTGCGACGAGGAGTCCGGCAACGTCACCGGAATCGTCCTCGACCGCCTCCACCTCGGCGGGGAGCTCAAGTTCCACACTCTCCTCGACCTCAAGATGCTCAGAAACCTCTCCCTCTCCGGCAACGATTTCACTGGAAGGTTGCCTCCTTCCCTGGGCTCGCTCTCCTCGCTCCAGCATTTGGATCTTTCTCAGAACAAGTTCTACGGCCCCATCCCCGCTCGGATCAACGACCTTTGGGGTCTTAATTACCTCAATTTGTCCAACAACCAGTTCAAGGGCGGCTTCCCCAGTGGCCTCTCCAACCTTCAGCAGCTCCGAGTTCTCGATTTGCATGCCAACGCTCTCTGGGCGGAAATTGGGGACGTCCTCTCTACGCTACGGAATGTGGAGCGCGTCGATTTGAGTCTTAACCAGTTCTTTGGCGGACTTTCCTTGACCGTGGAGAATATTTCTGGATTGGCCAACACGGTACATTTTCTTAACCTCAGTTACAACAACTTGAACGGTCACTTCTTTAAGAACTCCACCATTGGCCTGTTTCGCAACCTGCAAGTTTTGGACTTGAGTAATAATTCCATCACCGGGGAGCTTCCTTCTTTTGGCTCATTACCCGCACTTCGCGTTCTTAGGCTTCCCCGGAACCAACTGTTTGGCTCCGTGCCCGAGGAATTGTTGCAAACTTCAGTGCCACTGGTAGAATTGGATCTTAGCGTCAACGGGTTTACCGGCTCTATAGCTGCAATTAACTCTACAAGTTTAAGTATTTTGAATCTTTCATCCAATAGTTTGTCAGGATCGTTGCCAACTTCTTTGACAAGATGTACGGTCATTGACATTAGCAGAAATATGTTATCTGGTGACATTTCTGTTATACAGAACTGGGAAGCCCCACTGGAGGTTATTAATCTGAGTTCAAACAAGCTGTCAGGATCCTTGCCCCCTACTTTAGGAACCTATTCAAAATTGTTTAGAGTTGATTTAAGTTTAAATGAGCTCAAGGGATCCATTCCACGAGGTTTAGTTACTTCATCATCAGTGACAAGACTGAATCTTTCTGGGAATCAACTCACAGGGCAACTTCTGCTTCAAGGTTCAGGAGCCAGTGAGTTACTCCTTATGCCTCCTTATCAACCAATGGAATATCTTGATGTATCTAATAACTCCTTAGAAGGTGCCTTGCCTTCTGAAATAGATAGGATGAGTGTCCTCAAACTGCTGAATGTGGCTAGGAATGAGTTTTCCGGACCTCTGCCAAGTGAATTGAACAAACTTCTTTATTTGGAGTACCTTGATTTGTCTAACAACAAATTTTCTGGAAATATTCCTGATAAGCTTTCATCCAACTTAACTGTATTTAACGTGTCCAATAATGATCTATCTGGTCGAGTTCCAGAAAATTTGCGGCAGTTCTCTCCTTCATCCTTTCGCCCTGGAAATGGAAAGTTAATGTTACCAAAAGATTCTCCTGAGACTTCTTCGGTGCCTGATAACATTCCAGATAAGGGTAGACGTCATAGTTCAAAGGGTAATATCAGGATAGCAATTATTCTTGCCTCTGTAGGTGCTGCTATTATGATTGCTTTTGTTTTATTGGCATATCATCGAACACAACTAAAAGAATTTCATGGAAGAAGTGAGTTCACTGGTCAAAATACTAGAAGAGATGTCAAGTTAGGAGGACTTTCAAGGCCTTCCCTCTTCAAGTTCAATACAAATGTTCAACCCCCAACAACCTCATTGAGCTTTTCGAATGACCACCTCCTGACTTCCAATTCGAGGTCACTCTCTGGTGGACAGTCAGAGTTTATAACTGAAATTTCTGAGCATGGCTTAACGCAGGGAATGGTGGCTACTAGTTCAGCATCTGTAAATCCTAATTTGATGGATAACCCTCCCACTTCATCTGGAAGGAAGTCTTCTCCTGGTTCCCCATTGTCATCCTCACCACGTTTCATAGAGGCTTGTGAAAAGCCAGTGATGTTGGATGTTTACTCACCAGATCGGTTGGCTGGGGAATTGTTTTTCCTGGACTCTTCCCTGGCATTCACTGCAGAGGAATTATCTAGAGCACCAGCTGAAGTTCTTGGCAGAAGTAGCCATGGCACTTTATATAAAGCAACTTTGGACAGTGGTCATATGTTGACTGTAAAATGGTTACGGGTAGGATTGGTGAAACATAAAAAGGAATTTGCTAGAGAAGTTAAAAGGATTGGTTCTATGAGGCATCCAAACATTGTCCCATTACGAGCATACTATTGGGGGCCTAGGGAACAAGAAAGGCTTCTTTTAGCTGACTATATACATGGGGACAATTTGGCCCTTCATCTCTATGAGAGCACACCCAGAAGGTACTCCCCGTTATCATTCAGCCAGAGAATAAAAGTTGCTGTTGATGTTGCACGATGTCTTCTATACCTTCATGACCGAGGACTTCCCCATGGAAATCTGAAGCCCACGAATATAGTTTTGGCAGGCCCTGATTTCAGTGCTCGTCTTACTGACTATGGTCTTCACCGGCTGATGACTCCGGCTGGAATTGCAGAGCAGATACTCAACCTTGGAGCACTTGGATACCGTGCTCCGGAACTTGCTGCTGCATCCAAACCGGTTCCTTCGTTTAAGGCCGATGTGTATGCTCTTGGTGTGATCCTAATGGAATTGTTGACAAGAAAAAGTGCAGGTGACATAATATCGGGGCAGTCAGGTGCTGTTGATCTTACAGATTGGGTTAGGCTGTGTGAGCGAGAAGGAAGGGTAATGGACTGTATCGACAGAGACATTGCAGGTGGGGAAGAATCCTCCAAAGAGATGGATGAACTGCTTGCAATATCTCTCAGGTGTATTCTCCCTGTAAATGAGAGGCCTAACATCAGACAAGTTTTTGACGATCTGTGTTCAATATCCGTTTGA 3132 0.4569 MNSPPNLFVSFLLLLLLFFTVFSVSSSASLPELRSLMEFKKGITQDPHNLLDSWAPAAVAESTAACPSTWQGILCDEESGNVTGIVLDRLHLGGELKFHTLLDLKMLRNLSLSGNDFTGRLPPSLGSLSSLQHLDLSQNKFYGPIPARINDLWGLNYLNLSNNQFKGGFPSGLSNLQQLRVLDLHANALWAEIGDVLSTLRNVERVDLSLNQFFGGLSLTVENISGLANTVHFLNLSYNNLNGHFFKNSTIGLFRNLQVLDLSNNSITGELPSFGSLPALRVLRLPRNQLFGSVPEELLQTSVPLVELDLSVNGFTGSIAAINSTSLSILNLSSNSLSGSLPTSLTRCTVIDISRNMLSGDISVIQNWEAPLEVINLSSNKLSGSLPPTLGTYSKLFRVDLSLNELKGSIPRGLVTSSSVTRLNLSGNQLTGQLLLQGSGASELLLMPPYQPMEYLDVSNNSLEGALPSEIDRMSVLKLLNVARNEFSGPLPSELNKLLYLEYLDLSNNKFSGNIPDKLSSNLTVFNVSNNDLSGRVPENLRQFSPSSFRPGNGKLMLPKDSPETSSVPDNIPDKGRRHSSKGNIRIAIILASVGAAIMIAFVLLAYHRTQLKEFHGRSEFTGQNTRRDVKLGGLSRPSLFKFNTNVQPPTTSLSFSNDHLLTSNSRSLSGGQSEFITEISEHGLTQGMVATSSASVNPNLMDNPPTSSGRKSSPGSPLSSSPRFIEACEKPVMLDVYSPDRLAGELFFLDSSLAFTAEELSRAPAEVLGRSSHGTLYKATLDSGHMLTVKWLRVGLVKHKKEFAREVKRIGSMRHPNIVPLRAYYWGPREQERLLLADYIHGDNLALHLYESTPRRYSPLSFSQRIKVAVDVARCLLYLHDRGLPHGNLKPTNIVLAGPDFSARLTDYGLHRLMTPAGIAEQILNLGALGYRAPELAAASKPVPSFKADVYALGVILMELLTRKSAGDIISGQSGAVDLTDWVRLCEREGRVMDCIDRDIAGGEESSKEMDELLAISLRCILPVNERPNIRQVFDDLCSISV 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4458g00001 1043 Gene3D Ribonuclease Inhibitor 32 193 IPR032675 -
Vium4458g00001 1043 PANTHER OS07G0626500 PROTEIN 13 107 - -
Vium4458g00001 1043 Pfam Protein kinase domain 767 1034 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4458g00001 1043 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 231 444 - -
Vium4458g00001 1043 SUPERFAMILY L domain-like 305 542 - -
Vium4458g00001 1043 FunFam Pollen receptor-like kinase 1 841 1043 - -
Vium4458g00001 1043 Pfam Leucine Rich repeats (2 copies) 256 288 IPR025875 -
Vium4458g00001 1043 MobiDBLite consensus disorder prediction 537 579 - -
Vium4458g00001 1043 SUPERFAMILY L domain-like 66 363 - -
Vium4458g00001 1043 Pfam Leucine rich repeat N-terminal domain 32 76 IPR013210 -
Vium4458g00001 1043 SUPERFAMILY Protein kinase-like (PK-like) 766 1038 IPR011009 -
Vium4458g00001 1043 MobiDBLite consensus disorder prediction 695 723 - -
Vium4458g00001 1043 FunFam Nuclear pore complex protein NUP107 29 195 - -
Vium4458g00001 1043 Gene3D Transferase(Phosphotransferase) domain 1 842 1043 - -
Vium4458g00001 1043 Gene3D Phosphorylase Kinase; domain 1 744 840 - -
Vium4458g00001 1043 FunFam Leucine-rich repeat receptor protein kinase EMS1 447 540 - -
Vium4458g00001 1043 SMART LRR_typ_2 498 522 IPR003591 -
Vium4458g00001 1043 SMART LRR_typ_2 176 200 IPR003591 -
Vium4458g00001 1043 SMART LRR_typ_2 254 276 IPR003591 -
Vium4458g00001 1043 SMART LRR_typ_2 277 301 IPR003591 -
Vium4458g00001 1043 SMART LRR_typ_2 128 152 IPR003591 -
Vium4458g00001 1043 SMART LRR_typ_2 325 348 IPR003591 -
Vium4458g00001 1043 ProSiteProfiles Leucine-rich repeat profile. 256 278 IPR001611 GO:0005515
Vium4458g00001 1043 MobiDBLite consensus disorder prediction 695 721 - -
Vium4458g00001 1043 Gene3D Ribonuclease Inhibitor 194 301 IPR032675 -
Vium4458g00001 1043 ProSiteProfiles Protein kinase domain profile. 763 1043 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4458g00001 1043 Gene3D Ribonuclease Inhibitor 302 566 IPR032675 -
Vium4458g00001 1043 FunFam Leucine-rich repeat receptor-like protein kinase 748 840 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4458g00001 Vium-Chr4458 10638 15990 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4458g00001 12 620 Receptor kinase-like Gene Family AT5G62230 33.549 8.48e-62 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vium4458g00001 Pkinase 8e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4458g00001 - - gmx:100802768 1780.38