Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4454g00001 ATGACTCAGCAGAATGTGGTATTGTCCAAGACAAAATCCGGGATCAACAGGGACCTAACGGTTGCGCAAAAGCCACCGGCGGCGCCGGGAGGCTACATTCCCATTCCGAGGAGGAGGGTTTTGAAGAACCTTGAGATCAATGGAGGACAAAGAATCAATGCATGGGTTGATTCCATGAGAGCCTCTTCTCCCACCCATGCCAAATCAACCTCTTCCTTAGCTGATGAACACAGCTCTTGGATTCTTCGCCACCCTTCGGCATTAGACATGTTTGAGCAAATTATGGATGCATCCAGGGGAAAGCAAATCGTCATGTTCCTGGACTATGATGGTACTTTGTCACCTATTGTTGATGATCCAGACCGTGCTTTCATGTCGGATTCGATGAGGAAAACAGTGAGGAAACTTGCGAGGTGTTTTCCCACTGCTATAGTTACAGGCAGATGCAGAGACAAGGTTTACAATTTTGTGCGCTTGGCCGAGCTATATTATGCTGGAAGCCATGGCATGGATATCCAAGGGCCAACAAGAGACTCCAAATACAGCAACAAAGACAAAGGAGAGCCAGTTCTTTTCCAACCTGCCAGTGAATTTCTTCCCATGATAGATGAGGTGTACAACCAATTAGTTGAGAAAATGAAATCAATCCCTGGAGCAAGGGTGGAGAACAACAAGTTCTGCGCCTCTGTTCATTTTCGCTGCGTTGATGAAAAGAAATGGAGTGAACTGGCACAGGAAGTGAGATCAGTATTAAAAGAGTACCCGAAGCTTCGTCTTAACCAAGGAAGAAAGGTATTAGAGATTCGTCCATCCATTAAATGGGACAAAGGGAAAGCACTGGAATTTTTGTTAGAGTCACTTGGATTTGCCAACTGTAACGATGTCTTTCCTGTTTACATTGGAGATGATAAAACCGATGAAGATGCATTCAAGAAACTTAGAGACAGAGGACAAGGTTTTGGGATTCTTGTCTCGAAATTCCCAAAGGACACTACTGCATCATACTCTTTACAAGAACCTAACGAGGTGATGGATTTCCTTCAACGATTGGTGGAATGGAAACAAGTATCCCTTCGTCTCCGAGCACGTTCCCGTGTGTAA 1101 0.4496 MTQQNVVLSKTKSGINRDLTVAQKPPAAPGGYIPIPRRRVLKNLEINGGQRINAWVDSMRASSPTHAKSTSSLADEHSSWILRHPSALDMFEQIMDASRGKQIVMFLDYDGTLSPIVDDPDRAFMSDSMRKTVRKLARCFPTAIVTGRCRDKVYNFVRLAELYYAGSHGMDIQGPTRDSKYSNKDKGEPVLFQPASEFLPMIDEVYNQLVEKMKSIPGARVENNKFCASVHFRCVDEKKWSELAQEVRSVLKEYPKLRLNQGRKVLEIRPSIKWDKGKALEFLLESLGFANCNDVFPVYIGDDKTDEDAFKKLRDRGQGFGILVSKFPKDTTASYSLQEPNEVMDFLQRLVEWKQVSLRLRARSRV 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4454g00001 366 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 33 359 IPR044651 GO:0004805|GO:0005992
Vium4454g00001 366 FunFam Trehalose 6-phosphate phosphatase 201 360 - -
Vium4454g00001 366 Pfam Trehalose-phosphatase 106 340 IPR003337 GO:0003824|GO:0005992
Vium4454g00001 366 SUPERFAMILY HAD-like 104 353 IPR036412 -
Vium4454g00001 366 CDD HAD_TPP 104 344 - -
Vium4454g00001 366 FunFam Trehalose 6-phosphate phosphatase 195 271 - -
Vium4454g00001 366 Gene3D - 103 190 IPR023214 -
Vium4454g00001 366 Gene3D - 203 362 IPR023214 -
Vium4454g00001 366 NCBIfam HAD-IIB family hydrolase 105 316 IPR006379 -
Vium4454g00001 366 NCBIfam trehalose-phosphatase 101 351 IPR003337 GO:0003824|GO:0005992
Vium4454g00001 366 FunFam Trehalose 6-phosphate phosphatase 103 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4454g00001 Vium-Chr4454 11846 14825 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4454g00001 94 357 Trehalose Biosynthesis Gene Families AT1G06410 24.735 3.95e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4454g00001 K01087 - gmx:100788735 673.315