Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium4451g00002 | ATGAAGAGACTTAGCAGTTCAGATTCTTCTTCCACTCCCCTGATCACAGTTTGTCCATCAACAGAGGAACACAGTACGAGAAACTGCCAACAGCACGTGTATGGTAGGGAGTTCCAATCGATGATGCTTGAGGGGCTTGACGAGGAAGGGTGTGTTGAAGAAGTGGGACATCAATCTGAGAAAAAACGGCGACTGAGTGTAGATCAAGTGAAGGCTTTGGAGAAGAACTTCGAGGTTGAAAACAAGCTTGAACCTGAGAGGAAGGTCAAACTTGCCCAAGAACTTGGGCTGCAACCTAGACAAGTAGCTGTCTGGTTCCAAAACCGTCGAGCAAGGTGGAAAACCAAACAATTGGAGAGAGATTACGGTGTCCTCAAAGCCAATTTTGATGCCCTCAAGCTTAACTATGACACCCTCAATCACGACAACGAAGCTTTACGGAAGCAGATAAAGGAACTGAAATCGAGGCTGGAGGAAGAGAACACTGGAAGCGGTGTTTCCGTGAAGGAGGAAATAATGATGCCTGACTCGGACGACAAAACAACGACGGAACAACAAAGTAAGAGCGAGCCTAGTTCGGAATCCGAGGATCAGTTGAACTACGAGTGTTTAAACAACAACAAGAACAGCGCTTGTTTCGGAGGCGCTTCGCTCTTCCCAGTGGACTTCAAAGACGGTTCTTCCGACAGCGATTCGAGCGCGATCTTGAACGAAGAGAACCACTGCAGCCCCATAACCGAACATCTCTTGCTGTCAACGGAATCTTCCTCGATGAACTGTTTGCAGTTCCAGAAAGCGTATCAGGCGCAGTACGTGGTGAAGATGGAGGAGCACAACTTCTTCAGCGCCGATGAGGCCTGCAATTTCTTTTCTGATGAACAAGCTCCGACGTTGCAGTGGTGGAGCTGA | 909 | 0.4829 | MKRLSSSDSSSTPLITVCPSTEEHSTRNCQQHVYGREFQSMMLEGLDEEGCVEEVGHQSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANFDALKLNYDTLNHDNEALRKQIKELKSRLEEENTGSGVSVKEEIMMPDSDDKTTTEQQSKSEPSSESEDQLNYECLNNNKNSACFGGASLFPVDFKDGSSDSDSSAILNEENHCSPITEHLLLSTESSSMNCLQFQKAYQAQYVVKMEEHNFFSADEACNFFSDEQAPTLQWWS | 302 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium4451g00002 | 302 | PRINTS | Lambda-repressor HTH signature | 96 | 112 | IPR000047 | GO:0003677 | |
| Vium4451g00002 | 302 | PRINTS | Lambda-repressor HTH signature | 87 | 96 | IPR000047 | GO:0003677 | |
| Vium4451g00002 | 302 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Vium4451g00002 | 302 | ProSiteProfiles | 'Homeobox' domain profile. | 56 | 116 | IPR001356 | GO:0003677 | |
| Vium4451g00002 | 302 | MobiDBLite | consensus disorder prediction | 156 | 199 | - | - | |
| Vium4451g00002 | 302 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 42 | 275 | IPR045224 | GO:0003700 | |
| Vium4451g00002 | 302 | Pfam | Homeodomain | 61 | 114 | IPR001356 | GO:0003677 | |
| Vium4451g00002 | 302 | ProSitePatterns | 'Homeobox' domain signature. | 91 | 114 | IPR017970 | GO:0000981|GO:0006355 | |
| Vium4451g00002 | 302 | SUPERFAMILY | Homeodomain-like | 46 | 118 | IPR009057 | - | |
| Vium4451g00002 | 302 | SMART | HOX_1 | 59 | 120 | IPR001356 | GO:0003677 | |
| Vium4451g00002 | 302 | FunFam | Homeobox-leucine zipper protein HAT5 | 54 | 118 | - | - | |
| Vium4451g00002 | 302 | Gene3D | - | 55 | 123 | - | - | |
| Vium4451g00002 | 302 | Pfam | Homeobox associated leucine zipper | 116 | 157 | IPR003106 | GO:0006355|GO:0043565 | |
| Vium4451g00002 | 302 | Coils | Coil | 129 | 163 | - | - | |
| Vium4451g00002 | 302 | CDD | homeodomain | 61 | 117 | IPR001356 | GO:0003677 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vium4451g00002 | Vium-Chr4451 | 25196 | 27547 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vium4451g00002 | 1 | 302 | Homeobox Transcription Factor Family | AT2G22430 | 48.318 | 3.13e-73 | 226 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | HB-HD-ZIP | Vium4451g00002 | Homeodomain | 2.4e-16 | CL0123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vium4451g00002 | K09338 | - | gmx:100777924 | 409.838 |