Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4447g00001 ATGGAAGATAGCTTTGGAGGCAGTTCCTCAAAGGACAAGTGCAGCATCAAGGAACAAGACCAGTTGTTGCCAATAGCCAATGTTGGTCGGCTCATGAAGCAGATTATGCCGCAGAATGCAAAGATCTCGAAGGAAGCAAAAGAGACAATGCAAGAATGTGTGTCGGAGTTCATAAGCTTTGTGACAAGTGAAGCTCGGAGAAAGACAATGAATGCTGATGACATTTGCTGGGTATTGGCTACGCTAGGATTTGATGACTATGTTGCACCAATGAGAAGGTACTTGCACAGATATAGAGAGCTTGAGCTAGACCGTAATAATAGTAAGCTCAATCATCATGAAAGATAA 348 0.4282 MEDSFGGSSSKDKCSIKEQDQLLPIANVGRLMKQIMPQNAKISKEAKETMQECVSEFISFVTSEAXRRKTMNADDICWVLATLGFDDYVAPMRRYLHRYRELELDRNNSKLNHHER 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4447g00001 116 PRINTS CCAAT-binding transcription factor subunit A signature 50 68 - -
Vium4447g00001 116 PRINTS CCAAT-binding transcription factor subunit A signature 82 100 - -
Vium4447g00001 116 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 80 IPR003958 -
Vium4447g00001 116 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 9 107 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vium4447g00001 116 Gene3D Histone, subunit A 11 116 IPR009072 GO:0046982
Vium4447g00001 116 SUPERFAMILY Histone-fold 19 112 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4447g00001 Vium-Chr4447 7316 7666 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4447g00001 16 116 CCAAT-HAP3 Transcription Factor Family AT2G47810 66.355 1.81e-48 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vium4447g00001 CBFD_NFYB_HMF 7.8e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4447g00001 K08065 - gmx:100794513 163.31