Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4446g00027 ATGGAAAGCATTGTTCCCCGGAGTGTTACCGCTTTGTTATTTTCCATGATATTTTTCTGCCTCACCCTGACAAAGGTAGGAGTCAATTGTCTCTCACCCGATGGACAAGCCCTTCTTTCTCTTCTGCCTGCTGCAGGCCCTGCTGCAACATCATCACCTGTTCTCTCCTCATGGAACCCATCAAGCTCAACACCATGTTCATGGAAAGGTATCACTTGCTCCCCACAAGGTAGAGTAATCTCCCTCTCTATTCCAGATACTTTTCTCAACCTCTCCTATTTACCCCCTCGGCTATCCTCTTTATCAATGCTTCAACTTCTCAATCTCTCTTCCACCAATGTCTCTGGCACCATTCCACCCTCTTTTGGTCAACTTTTCCATCTTCAGCTGCTTGACCTCTCCTCAAACTCTCTCACTGGTTCCATACCTGCTGAACTTGGAAGCCTCTCTTTACTTCAATTCCTTTTCTTGAACTCCAACAGATTGACAGGAAGCATTCCTCAACATCTTTCTAATCTCACTTCACTTGAAGTTCTCTGCCTCCAAGACAATCTTCTCAACGGTTCAATCCCATCACAGCTAGGCTCCTTGACATCATTGCAGCAGTTTCGGATAGGGGGAAATCCATATCTCACTGGACAAATCCCTTCACAGTTAGGCCTACTCACCAACCTCACCACTTTTGGTGCAGCTGCCACGGGACTTTCTGGTGCCATTCCCTCTACATTCGGTAACTTGATCAATCTACAGACTCTAGCACTTTATGATACTGAAATTTCTGGCTCAATGCCACCAGAGCTTGGGTTGTGTTCTGAGCTGAGAAATCTGTATCTGCACATGAATAAGCTCACTGGTTCTATCCCTCCACAATTGAGCAAGTTGCAAAAACTTACTAGCTTGCTACTTTGGGGCAATGCCTTAACTGGTCCAATCCCAGCAGAGCTTTCCAACTGTTCATCACTTGTTATATTTGATGTCTCTTCTAATGACCTCTCTGGGGAAATACCGGGGGACTTTGGGAAGCTGGTGGTTCTGGAACAGCTTCATCTATCTGATAATTCACTCACAGGTAAAATACCATGGCAGTTGAGCAACTGTACCAGCCTTTCTACTGTTCAGCTCGACAAGAATCAGTTATCAGGTACTATTCCCTGGGAGTTAGGTAAATTAAAGGTTCTACAGAGCTTTTTCTTATGGGGTAATCTAGTGTCTGGAACCATACCATCATCCTTTGGAAACTGCACAGAGCTCTACGCACTTGATCTTTCAAGGAATAAGCTAACAGGTTCTATACCAGAAGAGATTTTCGGCTTGAAGAAGCTGAGTAAGCTTCTGCTTCTGGGCAATTCATTAACAGGAGGATTGCCACCAAGTGTTGCAAATTGCCAGTCTTTGGTGAGGTTGAGGGTTGGAGAGAACCAGCTCAGAGGCCAGATTCCTAAAGAGATAGGTCAATTGCAGAATCTGGTGTTTCTCGACCTGTACATGAATCATTTCTCTGGAAGCATACCAGTGGAGATTGCTAATATCACAGTTCTTGAGCTGTTAGATGTTCACAACAACTACCTCACTGGGGAAATTCCATCTGTGATGGGGGAGCTTGAAAATTTGGAGCAGCTTGATCTCAGTAGAAACAGTTTGACAGGAGAAATTCCTTGGAGCTTCGGAAACTTCAGCTATTTGAACAAGCTCATCCTCAACAATAACGTACTGACAGGACCAATCCCAAAATCCATTAGAAATTTGCAGAAGTTAACTCTTCTGGATTTGAGTTACAATAGCCTCTCTGGTGGAATACCCCCAGAGATTGGTCATGTTACAAGCTTAACCATCAGCTTGGACTTGAGCTACAATTCATTTACAGGAGAAATCCCAGAATCAGTGTCTGCTTTGACACAGTTACAATCACTTGATCTTTCTCATAACATGCTTTATGGAGAAATCAAGGTTCTGGGGTCTCTCACTAGCCTCACCTCTCTCAATATCTCCTACAACAATTTCTCAGGTCCTATCCCAGTAACTCCATTCTTCAGAACACTATCCTCCAATTCATATATCCAGAACCCTGAGCTTTGTCAGTCCATTGATGGGGCTACCTGTTCTTCTAGTCTGATTCGAAAAAATGGTTTGAAATCTGCAAAAACCATTGCTTTGATCACAGTCATTCTAGCCTCGGTTACAATAATTCTCATTGCTTCCTGGATTCTAGTAACTCGTAATCATGGATACAAGGTTGAAAAAACATTGGGGGCATCAACTTCCACATCAGGAACTGAAGATTTCTCTTACCCTTGGACTTTCATCCCATTTCAGAAAGTAAACTTCAGCATCGGTAATATCTTGGATTGCTTGAAGGATGAAAATGTGATTGGAAAGGGCTGCTCAGGTGTTGTGTACAAGGCTGAGATGCCAAATGGGGAGTTGATTGCTGTAAAGAAGCTTTGGAAAGCAAGCAAAGCAGATGAAATAGTGGATTCTTTTGCTGCAGAGATACAGATTCTTGGATACATTCGGCATAGGAACATAGTGAGGCTCATAGGTTATTGTTCTAACAGGAGCGTTAATCTTCTTCTCTATAACTACATCCCAAATGGTAATCTGCGACAGCTTTTACAAGGGAACAGGAACTTAGACTGGGAAACAAGATACAAGATTGCTGTCGGATCAGCTCAAGGTCTAGCTTACCTTCATCATGATTGCGTACCTGCAATTCTCCATAGAGATGTCAAGTGCAATAACATACTTCTAGACTCCAAATTTGAGGCATATCTGGCAGATTTTGGTCTTGCAAAGCTAATGCATTCGCCAAATTATCATCATGCAATGTCCAGAGTTGCTGGTTCCTATGGTTATATTGCCCCAGAATATGGCTACTCCATGAACATAACAGAGAAGAGTGATGTCTATAGTTATGGGGTGGTTTTGCTAGAGATTCTAAGTGGTCGCAGTGCTGTCGAATCCCATGTTGGAGATGGGCAACACATAGTGGAATGGGTGAAGAGGAAGATGGGAAGCTTTGAACCAGTTATATCAATACTAGACACAAAGCTGCAAGGTCTACCAGATCAAATGGTGCAAGAGATGCTTCAAACACTTGGAATTGCTATGTTTTGTGTGAACTCTTCCCCATCAGAGCGCCCCACAATGAAGGAAGTGGTTGCACTACTAATGGAGGTGAAGAGCCAGCCTGAGGAGATGGGCAAGACCTCTCAACCTCTAATAAAACAGTCCTTAAATCAAAACTGA 3246 0.4328 MESIVPRSVTALLFSMIFFCLTLTKVGVNCLSPDGQALLSLLPAAGPAATSSPVLSSWNPSSSTPCSWKGITCSPQGRVISLSIPDTFLNLSYLPPRLSSLSMLQLLNLSSTNVSGTIPPSFGQLFHLQLLDLSSNSLTGSIPAELGSLSLLQFLFLNSNRLTGSIPQHLSNLTSLEVLCLQDNLLNGSIPSQLGSLTSLQQFRIGGNPYLTGQIPSQLGLLTNLTTFGAAATGLSGAIPSTFGNLINLQTLALYDTEISGSMPPELGLCSELRNLYLHMNKLTGSIPPQLSKLQKLTSLLLWGNALTGPIPAELSNCSSLVIFDVSSNDLSGEIPGDFGKLVVLEQLHLSDNSLTGKIPWQLSNCTSLSTVQLDKNQLSGTIPWELGKLKVLQSFFLWGNLVSGTIPSSFGNCTELYALDLSRNKLTGSIPEEIFGLKKLSKLLLLGNSLTGGLPPSVANCQSLVRLRVGENQLRGQIPKEIGQLQNLVFLDLYMNHFSGSIPVEIANITVLELLDVHNNYLTGEIPSVMGELENLEQLDLSRNSLTGEIPWSFGNFSYLNKLILNNNVLTGPIPKSIRNLQKLTLLDLSYNSLSGGIPPEIGHVTSLTISLDLSYNSFTGEIPESVSALTQLQSLDLSHNMLYGEIKVLGSLTSLTSLNISYNNFSGPIPVTPFFRTLSSNSYIQNPELCQSIDGATCSSSLIRKNGLKSAKTIALITVILASVTIILIASWILVTRNHGYKVEKTLGASTSTSGTEDFSYPWTFIPFQKVNFSIGNILDCLKDENVIGKGCSGVVYKAEMPNGELIAVKKLWKASKADEIVDSFAAEIQILGYIRHRNIVRLIGYCSNRSVNLLLYNYIPNGNLRQLLQGNRNLDWETRYKIAVGSAQGLAYLHHDCVPAILHRDVKCNNILLDSKFEAYLADFGLAKLMHSPNYHHAMSRVAGSYGYIAPEYGYSMNITEKSDVYSYGVVLLEILSGRSAVESHVGDGQHIVEWVKRKMGSFEPVISILDTKLQGLPDQMVQEMLQTLGIAMFCVNSSPSERPTMKEVVALLMEVKSQPEEMGKTSQPLIKQSLNQN 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4446g00027 1081 SUPERFAMILY L domain-like 438 693 - -
Vium4446g00027 1081 Gene3D Phosphorylase Kinase; domain 1 763 861 - -
Vium4446g00027 1081 SMART LRR_typ_2 294 318 IPR003591 -
Vium4446g00027 1081 SMART LRR_typ_2 342 366 IPR003591 -
Vium4446g00027 1081 SMART LRR_typ_2 631 658 IPR003591 -
Vium4446g00027 1081 SMART LRR_typ_2 414 438 IPR003591 -
Vium4446g00027 1081 SMART LRR_typ_2 173 197 IPR003591 -
Vium4446g00027 1081 SMART LRR_typ_2 125 149 IPR003591 -
Vium4446g00027 1081 SMART LRR_typ_2 582 606 IPR003591 -
Vium4446g00027 1081 SMART LRR_typ_2 534 557 IPR003591 -
Vium4446g00027 1081 ProSiteProfiles Protein kinase domain profile. 784 1074 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4446g00027 1081 FunFam Putative LRR receptor-like serine/threonine-protein kinase 433 702 - -
Vium4446g00027 1081 Gene3D Transferase(Phosphotransferase) domain 1 862 1078 - -
Vium4446g00027 1081 Pfam Leucine rich repeat 104 162 IPR001611 GO:0005515
Vium4446g00027 1081 Pfam Leucine rich repeat 393 451 IPR001611 GO:0005515
Vium4446g00027 1081 PRINTS Leucine-rich repeat signature 631 644 - -
Vium4446g00027 1081 PRINTS Leucine-rich repeat signature 128 141 - -
Vium4446g00027 1081 ProSiteProfiles Leucine-rich repeat profile. 633 655 IPR001611 GO:0005515
Vium4446g00027 1081 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 862 1074 - -
Vium4446g00027 1081 Pfam Protein kinase domain 786 1053 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4446g00027 1081 Gene3D Ribonuclease Inhibitor 286 382 IPR032675 -
Vium4446g00027 1081 SMART serkin_6 784 1060 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4446g00027 1081 FunFam Putative LRR receptor-like serine/threonine-protein kinase 769 861 - -
Vium4446g00027 1081 SUPERFAMILY Protein kinase-like (PK-like) 764 1056 IPR011009 -
Vium4446g00027 1081 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 444 1061 - -
Vium4446g00027 1081 ProSitePatterns Serine/Threonine protein kinases active-site signature. 904 916 IPR008271 GO:0004672|GO:0006468
Vium4446g00027 1081 Pfam Leucine rich repeat N-terminal domain 32 74 IPR013210 -
Vium4446g00027 1081 Gene3D Ribonuclease Inhibitor 383 477 IPR032675 -
Vium4446g00027 1081 ProSitePatterns Protein kinases ATP-binding region signature. 790 813 IPR017441 GO:0005524
Vium4446g00027 1081 SUPERFAMILY RNI-like 107 507 - -
Vium4446g00027 1081 Gene3D Ribonuclease Inhibitor 478 576 IPR032675 -
Vium4446g00027 1081 Gene3D Ribonuclease Inhibitor 191 285 IPR032675 -
Vium4446g00027 1081 Gene3D Ribonuclease Inhibitor 577 702 IPR032675 -
Vium4446g00027 1081 Gene3D Ribonuclease Inhibitor 33 190 IPR032675 -
Vium4446g00027 1081 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 209 432 - -
Vium4446g00027 1081 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g34110 31 193 - -
Vium4446g00027 1081 Pfam Leucine Rich Repeat 584 605 IPR001611 GO:0005515
Vium4446g00027 1081 Pfam Leucine Rich Repeat 345 366 IPR001611 GO:0005515
Vium4446g00027 1081 Pfam Leucine Rich Repeat 536 558 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4446g00027 Vium-Chr4446 150977 155581 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4446g00027 28 1075 Receptor kinase-like Gene Family AT5G56040 44.591 0.0 851
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium4446g00027 Pkinase 1.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4446g00027 - - gmx:100819611 1919.05