Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4446g00020 ATGGCGCGGGATGGGAGCGTCGTCCCTGCGGATCCGCAGGCAGTTGTGAAGAAGAAGACACAGTCGTCGAGAAGTTGGATTATGTTTGATGCTACAGGGCAGGGTTCATTGCTCGACGCGGACAAATATGCAATCATGCATCGGGTTCAGATTCATGCGCGTGATCTCAGAATCCTTGATCCCTTGCTTTCTTACCCTTCCACTATTCTCGGTCGTGAGAAGGCCATTGTTCTTAACTTGGAGCATATCAAGGCAATTATCACCGCTGAAGAGGTATTGTTGAGAGATCCAACAGATGAAAATGTGATCCCTGTTGTCGAGGAACTGCAAAGGCGGTTGCCTCAATCAAGTGCCGGTCTTCAAGGTAAAGAGTATCTTGGTGGCCAAAATGATGCTGAAGCAGCTGAAGATGATGCACCCTTTGAATTCCGGGCCCTGGAAGTTGCTTTAGAAGCCATTTGCAGTTTTCTTGCTGCACGTACAACAGAATTGGAGATGGCTGCTTATCCTGCACTAGATGAACTTACCTCCAAGATTAGTAGTCGTAATTTGGACAGAGTTCGTAAACTGAAGAGCGCAATGACAAGGCTGACGGCTAGAGTACAAAAGGTCAGAGATGAGCTGGAACAATTGCTGGATGATGATGATGATATGGCTGACCTATACCTGTCAAGAAAAGCTGGTTCATCATCACCAGTCAGTGGAATAGGTGCTTCAAATTGGTTTGCTTCCTCCCCCACCTTAGGATCAAGGATATCTAGGGCAAGTAGAGCAAGTCTAGCAACAGTCCGTTTAGATGAAAATGATGTGGAAGAGCTTGAAATGTTACTTGAGGCTTATTTTAGTGAAATTGATCATACGTTGAACAAATTAACCACACTGCGAGAGTACATTGATGATACTGAAGATTATATTAATATTCAACTTGACAACCATCGTAATCAGCTCATTCAGTTAGAACTCTTTCTTAGTTCTGGAACTGTTTGCCTATCTTTCTACTCTTTGGTGACTGCTATATTTGGCATGAATATCCCATACACTTGGAACGACAACCATGATTACATGTTCAAATGGGTAGTTATTGTCTCAGGAGTACTTTCTGCTGTGATGTTTGTCATAATTACAGCCTATGCTCGCAATAAGGGATTAGTTGGATCGTGA 1161 0.4367 MARDGSVVPADPQAVVKKKTQSSRSWIMFDATGQGSLLDADKYAIMHRVQIHARDLRILDPLLSYPSTILGREKAIVLNLEHIKAIITAEEVLLRDPTDENVIPVVEELQRRLPQSSAGLQGKEYLGGQNDAEAAEDDAPFEFRALEVALEAICSFLAARTTELEMAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKAGSSSPVSGIGASNWFASSPTLGSRISRASRASLATVRLDENDVEELEMLLEAYFSEIDHTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSFYSLVTAIFGMNIPYTWNDNHDYMFKWVVIVSGVLSAVMFVIITAYARNKGLVGS 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4446g00020 386 Coils Coil 187 214 - -
Vium4446g00020 386 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 16 384 IPR039204 -
Vium4446g00020 386 CDD Mrs2_Mfm1p-like 26 383 IPR039204 -
Vium4446g00020 386 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 322 374 IPR045863 -
Vium4446g00020 386 FunFam Magnesium transporter MRS2-1 14 97 - -
Vium4446g00020 386 Pfam CorA-like Mg2+ transporter protein 255 374 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Vium4446g00020 386 Gene3D Magnesium transport protein CorA, transmembrane region 101 316 - -
Vium4446g00020 386 Gene3D - 12 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4446g00020 Vium-Chr4446 101632 106057 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4446g00020 1 359 MRS2 Gene Family AT5G64560 80.707 0.0 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4446g00020 K16075 - gmx:100810239 654.825