Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4446g00019 ATGGCGCGGGATGGGAGCGTCGTCCCTGCGGATCCGCAGGCAGTTGTGAAGAAGAAGACACAGTCGTCGAGAAGTTGGATTATGTTTGATGCTACAGGGCAGGGTTCATTGCTCGACGCGGACAAATATGCAATCATGCATCGGGTTCAGATTCATGCGCGTGATCTCAGAATCCTTGATCCCTTGCTTTCTTACCCTTCCACTATTCTCGGTCGTGAGAAGGCCATTGTTCTTAACTTGGAGCATATCAAGGCAATTATCACCGCTGAAGAGGTATTGTTGAGAGATCCAACAGATGAAAATGTGATCCCTGTTGTCGAGGAACTGCAAAGGCGGTTGCCTCAATCAAGTGCCGGTCTTCAAGGTAAAGAGTATCTTGGTGGCCAAAATGATGCTGAAGCAGCTGAAGATGATGAGTCACCCTTTGAATTCCGGGCCCTGGAAGTTGCTTTAGAAGCCATTTGCAGTTTTCTTGCTGCACGTACAACAGAATTGGAGATGGCTGCTTATCCTGCACTAGATGAACTTACCTCCAAGATTAGTAGTCGTAATTTGGACAGAGTTCGTAAACTGAAGAGCGCAATGACAAGGCTGACGGCTAGAGTACAAAAGGTCAGAGATGAGCTGGAACAATTGCTGGATGATGATGATGATATGGCTGACCTATACCTGTCAAGAAAAGCTGGTTCATCATCACCAGTCAGTGGAATAGGTGCTTCAAATTGGTTTGCTTCCTCCCCCACCTTAGGATCAAGGATATCTAGGGCAAGTAGAGCAAGTCTAGCAACAGTCCGTTTAGATGAAAATGATGTGGAAGAGCTTGAAATGTTACTTGAGGCTTATTTTAGTGAAATTGATCATACGTTGAACAAATTAACCACACTGCGAGAGTACATTGATGATACTGAAGATTATATTAATATTCAACTTGACAACCATCGTAATCAGCTCATTCAGTTAGAACTCTTTCTTAGTTCTGGAACTGTTTGCCTATCTTTCTACTCTTTGGTGACTGCTATATTTGGCATGAATATCCCATACACTTGGAACGACAACCATGATTACATGTTCAAATGGGTAGTTATTGTCTCAGGAGTACTTTCTGCTGTGATGTTTGTCATAATTACAGCCTATGCTCGCAATAAGGGATTAGTTGGATCGTGA 1164 0.4364 MARDGSVVPADPQAVVKKKTQSSRSWIMFDATGQGSLLDADKYAIMHRVQIHARDLRILDPLLSYPSTILGREKAIVLNLEHIKAIITAEEVLLRDPTDENVIPVVEELQRRLPQSSAGLQGKEYLGGQNDAEAAEDDESPFEFRALEVALEAICSFLAARTTELEMAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKAGSSSPVSGIGASNWFASSPTLGSRISRASRASLATVRLDENDVEELEMLLEAYFSEIDHTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSFYSLVTAIFGMNIPYTWNDNHDYMFKWVVIVSGVLSAVMFVIITAYARNKGLVGS 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4446g00019 387 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 16 385 IPR039204 -
Vium4446g00019 387 Gene3D Magnesium transport protein CorA, transmembrane region 103 317 - -
Vium4446g00019 387 Coils Coil 188 215 - -
Vium4446g00019 387 FunFam Magnesium transporter MRS2-1 14 97 - -
Vium4446g00019 387 CDD Mrs2_Mfm1p-like 26 384 IPR039204 -
Vium4446g00019 387 Pfam CorA-like Mg2+ transporter protein 256 375 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Vium4446g00019 387 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 323 375 IPR045863 -
Vium4446g00019 387 Gene3D - 12 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4446g00019 Vium-Chr4446 101632 106057 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4446g00019 1 360 MRS2 Gene Family AT5G64560 80.978 0.0 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4446g00019 K16075 - gmx:100810239 673.315