Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4446g00007 ATGGGTGAAGCTTCAGGAGATGGTTCCGCTGATTGTTTCAGCCAGATGATGTCGTCGATGCCGGGCTTTCGCTTCCATCCTACGGATGAGGAGTTGGTGATGTACTATCTGAAGCGGAAGATTTGTGGGAAGAGGCTGAAGCTCAACGTTATTCGTGAAACCGATGTGTATAAGTGGGATCCTGATGAGTTGCCTGGGCAATCCATACTGAAAACTGGAGATAGGCAGTGGTTCTTTTTCTGTCACAGAGATAGGAAATATCCTAATGGTGCAAGGTCTAATCGAGCCACCAGACATGGATACTGGAAGGCAACAGGAAAGGATCGTAATGTGATATGCAATTCTAGGGCAGTTGGAGTGAAAAAAACCCTGGTTTTCTACATAGGCAGAGCTCCTAGTGGAACGCGGACTGATTGGGTTATGCACGAATACACCATGGATGAAGAGGAGCTTAAGAGATGCCAAGGTGTTAAGGACTACTATGCACTTTATAAGGTTTTCAAGAAAAGTGGACCTGGTCCTAAAAATGGTGAACAGTATGGTGCACCATTTAATGAACAAGAGTGGGCAGCGGATGATGACATTGTGGATTTTAATAATAACATAACTGATCAGGAGGATCCAAATGTTGTCCCTGAGAATGGGAGTGCACTACATCCTTTGCTTGATGATGAAATCAATGACATCATTAGAGAAATTTTGGATGATGAGCTTGTCCTTGATCAACAGCATGTGAATGGTTATCTTAACTTTCCTCAGGTTGTTACTGAAGAAACACAAAGTACTGTTGTGGATCAGTTCTCTGAGGTGCTTATGTACCGTGAGACAACCGATCCTAGCTGTCAATATTTTGATGTGCAGCCCAGCTTTGACTTCAACCAGCCAGTTACTTCTCATTTACAAGTTTCTGAAGCTTCTGAGGTTTCTTCTGCCTCCAACATCCAAAGAAAGGGGCTTGACTTGGATAAGGTTGGCTTTTTGGAAATTAATGATCTCATTGATAATGATCCTGCTTTGGCAAATGTGGAAAATCCGGTGGAGTACCCGCATTTTGAAGATGGGTTAAGTGAACTTGATCTGTACCAAGATGCAGAGATGTTTCTTCGTGACCTGGGGCCAATAATTCACGAAACAGATTCACATGCATATACAAATGCCCTTGTCAGCAACAATATCGAAAGTCAAAGTTACCAGTTGCAATCCGGTTCTGAGGATGCCAACCAAACTGTTGGTGAATTCTGGATGCACGATGAAAGAAACACCCTGATTCCATCAGAAGAAGGCTTTGTCGATTCTTTCTCACTATCATCCCCAGGTGTTGTATGTGAATCTCTCAGCTTTCCTACGGAAGGCAATTACAGTCAAAGTAGCACCGTGGAAGATGTTTCTACAAGTAGCTTCTCCTCTTCTCTCTGGGCCTTTGTTGAGTCAATACCTACTACTCCTGCATCAGCTGCTGAAAGTGCTTTGGTGAATCGAGCTTTGAATCGAATGTCTAGCTTCAGCCGGGTAAAGATCAGGCACACAAACATTACTGCAGGTAAAGACACTGCAACTACGAAGAAAGCAGGCAGAAAGGGATTTTCATTCCTTTTCTTCCCTATTCTTATTGCTTTATGTGCTTTTTTGTGGGTTTTTGTTGGAAACTTAAGATCATTAGGGAGATGTATCTCTCCTTGA 1680 0.4304 MGEASGDGSADCFSQMMSSMPGFRFHPTDEELVMYYLKRKICGKRLKLNVIRETDVYKWDPDELPGQSILKTGDRQWFFFCHRDRKYPNGARSNRATRHGYWKATGKDRNVICNSRAVGVKKTLVFYIGRAPSGTRTDWVMHEYTMDEEELKRCQGVKDYYALYKVFKKSGPGPKNGEQYGAPFNEQEWAADDDIVDFNNNITDQEDPNVVPENGSALHPLLDDEINDIIREILDDELVLDQQHVNGYLNFPQVVTEETQSTVVDQFSEVLMYRETTDPSCQYFDVQPSFDFNQPVTSHLQVSEASEVSSASNIQRKGLDLDKVGFLEINDLIDNDPALANVENPVEYPHFEDGLSELDLYQDAEMFLRDLGPIIHETDSHAYTNALVSNNIESQSYQLQSGSEDANQTVGEFWMHDERNTLIPSEEGFVDSFSLSSPGVVCESLSFPTEGNYSQSSTVEDVSTSSFSSSLWAFVESIPTTPASAAESALVNRALNRMSSFSRVKIRHTNITAGKDTATTKKAGRKGFSFLFFPILIALCAFLWVFVGNLRSLGRCISP 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4446g00007 559 SUPERFAMILY NAC domain 15 169 IPR036093 GO:0003677|GO:0006355
Vium4446g00007 559 Pfam No apical meristem (NAM) protein 21 145 IPR003441 GO:0003677|GO:0006355
Vium4446g00007 559 Gene3D NAC domain 28 171 IPR036093 GO:0003677|GO:0006355
Vium4446g00007 559 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 19 256 - -
Vium4446g00007 559 FunFam Nac domain-containing protein 86 28 172 - -
Vium4446g00007 559 ProSiteProfiles NAC domain profile. 19 169 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4446g00007 Vium-Chr4446 33686 37476 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4446g00007 6 557 NAC Transcription Factor Family AT1G34190 44.957 3.99e-135 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium4446g00007 NAM 4.9e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4446g00007 - - gmx:100794925 903.664