Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4446g00006 ATGGCCACCTCCCAGTCCCAGCATCGCTGCGTTTTCGTTGGGAATATACCGTATGATGCCACAGAGGAACAGCTTGTCGAAATCTGTCAGGAGGTTGGCCCAGTAGTGTCATTCAGATTAGTTATTGACAGGGAAACCGGGAAACCGAAAGGTTATGGATTCTGTGAGTATAAGGATGAAGAAACAGCTTTAAGCGCTCGACGAAATCTTCAGGGTTATGAAATTAATGGCCGGCAATTGCGTGTTGATTTTGCCGAAAATGACAAAGGGACTGACAGAAATAGAGAACAGGGTCGTGGTGGGCCTGGAATGACAACAAATGTTGACCCTCAGAAACAAGTTGGTGGCCCAGCTGGGGAAGCTGTTCAGCATCAGCCTATTGGTCTTCATATTGCCATAACAGCTGCAACTGTCATGACAGCAGCTCTAGGCGGTGCTCAGTTTGGCATCCAGTCAAATCAAAATAGTTTGCAGAGTCAGTCAGCATTGGCACATGATCCTTTAACCCTGCATCTGGCCAAAATGTCCAGGAGTCAGCTTACGGAGATGATATCTGAACTCAAGGGAATGGCTACACAAAACAAGGATCTGGCTCGCCAGCTGTTGCTTTCAAGGCCACATTTGCCCAAGGCTCTTTTCCAGGCTCAAATAATGCTAGGAATGGTGTCTTCCCAAGTGTTACAAATGCCAAACCTTAGGCTGGTTTCAGATCAACCCTCACAGTCTTTAATGAATGAAGGTCAGCTGGCTCAGCCACCATTGGTTCAAACTCTGCCAGGCCTTCCTCCTCATGGGCAGAGCAAATTGCAGTCTGGTTTGACACCTTATGCTCAAGAAGGCCAAGTCAACACCATACTTCATAATCCTCTGGCTCCTAATCAATTAACTGCTCATCCAAAGCCTCCAGTGCAGCCCCGAATTCCCGTTCAACAACATCCAAACAACCCTGTACTGCCTGGAACTTTGTCAGGGCAGCCTAATTTATTACTTCCTTCTTTGCGCCCAGGTCTGGGAAGTTTGTCTGTCAGGCCTCCAATTCAACCGACAACTTCAACTGCTCTAAACCAGCAAATGCATGTCTCTTTGCTACAAAATTCTGCACATGTTGGAAACTCAACTGTCGGACATAATATTCAAATGGTTCGTCCAGATGCCAACTTTCAGCCTGGTCCCTCCATATCGGTGTCTACTTCTCAGTTATTGAGTAAAGGTGATAAATCTTCTAATATAACGTATTCAAACATGCCTTTGGGAGTAGAGAAAAAAAACAATGTTCGTGATTCTTCAGAATCTTTTTCTCGCCCATCAAAGCTCATGAAATTGGATGAGGGAAGGAGTACACCCCTTTCTACTGGGATGTCAGACGTGCCTGTCACTGATGGTCCGTCTCATACCCTTGGAAGAAGCTCATTGCCTGTACTTGCTACTCCTAAAGCAGAAGGGCAATACTCTGAGCTACAATCTTCTCAGCTTCCTCCTGATGTGGAGTCTGTTTTGCTGCAACAAGTATTGAATCTGACACCAGAGCAATTGAGTTCCTTACCACCAGAGCAGCAACAACAGGTAATTCAGCTCCAGCAGGCTCTTCGGCGAGATCAGATGCAGCCCTCATAA 1614 0.4634 MATSQSQHRCVFVGNIPYDATEEQLVEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGTDRNREQGRGGPGMTTNVDPQKQVGGPAGEAVQHQPIGLHIAITAATVMTAALGGAQFGIQSNQNSLQSQSALAHDPLTLHLAKMSRSQLTEMISELKGMATQNKDLARQLLLSRPHLPKALFQAQIMLGMVSSQVLQMPNLRLVSDQPSQSLMNEGQLAQPPLVQTLPGLPPHGQSKLQSGLTPYAQEGQVNTILHNPLAPNQLTAHPKPPVQPRIPVQQHPNNPVLPGTLSGQPNLLLPSLRPGLGSLSVRPPIQPTTSTALNQQMHVSLLQNSAHVGNSTVGHNIQMVRPDANFQPGPSISVSTSQLLSKGDKSSNITYSNMPLGVEKKNNVRDSSESFSRPSKLMKLDEGRSTPLSTGMSDVPVTDGPSHTLGRSSLPVLATPKAEGQYSELQSSQLPPDVESVLLQQVLNLTPEQLSSLPPEQQQQVIQLQQALRRDQMQPS 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4446g00006 537 MobiDBLite consensus disorder prediction 83 120 - -
Vium4446g00006 537 FunFam Cleavage stimulating factor 64 2 118 - -
Vium4446g00006 537 MobiDBLite consensus disorder prediction 389 418 - -
Vium4446g00006 537 MobiDBLite consensus disorder prediction 447 470 - -
Vium4446g00006 537 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 87 IPR000504 GO:0003723
Vium4446g00006 537 CDD RRM_CSTF2_RNA15_like 9 85 - -
Vium4446g00006 537 SUPERFAMILY RNA-binding domain, RBD 5 105 IPR035979 GO:0003676
Vium4446g00006 537 MobiDBLite consensus disorder prediction 389 470 - -
Vium4446g00006 537 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 81 IPR000504 GO:0003723
Vium4446g00006 537 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 3 533 - -
Vium4446g00006 537 Pfam Transcription termination and cleavage factor C-terminal 499 531 IPR026896 GO:0031124
Vium4446g00006 537 Gene3D - 1 120 IPR012677 -
Vium4446g00006 537 Pfam Hinge domain of cleavage stimulation factor subunit 2 158 228 IPR025742 -
Vium4446g00006 537 FunFam Related to Cleavage stimulation factor 490 532 - -
Vium4446g00006 537 SMART rrm1_1 10 83 IPR000504 GO:0003723
Vium4446g00006 537 Gene3D - 490 536 IPR038192 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4446g00006 Vium-Chr4446 18901 25739 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4446g00006 11 84 Eukaryotic Initiation Factors Gene Family AT2G23350 31.081 2.25e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4446g00006 K14407 - gmx:100794399 861.677