Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4446g00005 ATGGCCACCTCCCAGTCCCAGCATCGCTGCGTTTTCGTTGGGAATATACCGTATGATGCCACAGAGGAACAGCTTGTCGAAATCTGTCAGGAGGTTGGCCCAGTAGTGTCATTCAGATTAGTTATTGACAGGGAAACCGGGAAACCGAAAGGTTATGGATTCTGTGAGTATAAGGATGAAGAAACAGCTTTAAGCGCTCGACGAAATCTTCAGGGTTATGAAATTAATGGCCGGCAATTGCGTGTTGATTTTGCCGAAAATGACAAAGGGACTGACAGAAATAGAGAACAGGGTCGTGGTGGGCCTGGAATGACAACAAATGTTGACCCTCAGAAACAAGTTGGTGGCCCAGCTGGGGAAGCTGTTCAGCATCAGCCTATTGGTCTTCATATTGCCATAACAGCTGCAACTGTCATGACAGCAGCTCTAGGCGGTGCTCAGTTTGGCATCCAGTCAAATCAAAATAGTTTGCAGAGTCAGTCAGCATTGGCACATGATCCTTTAACCCTGCATCTGGCCAAAATGTCCAGGAGTCAGCTTACGGAGATGATATCTGAACTCAAGGGAATGGCTACACAAAACAAGGATCTGGCTCGCCAGCTGTTGCTTTCAAGGCCACATTTGCCCAAGGCTCTTTTCCAGGCTCAAATAATGCTAGGAATGGTGTCTTCCCAAGTGTTACAAATGCCAAACCTTAGGCTGGTTTCAGATCAACCCTCACAGTCTTTAATGAATGAAGGTCAGCTGGCTCAGCCACCATTGGTTCAAACTCTGCCAGGCCTTCCTCCTCATGGGCAGAGCAAATTGCAGTCTGGTTTGACACCTTATGCTCAAGAAGGCCAAGTCAACACCATACTTCATAATCCTCTGGCTCCTAATCAATTAACTGCTCATCCAAAGCCTCCAGTGCAGCCCCGAATTCCCGTTCAACAACATCCAAACAACCCTGTACTGCCTGGAACTTTGTCAGGGCAGCCTAATTTATTACTTCCTTCTTTGCGCCCAGGTCTGGGAAGTTTGTCTGTCAGGCCTCCAATTCAACCGACAACTTCAACTGCTCTAAACCAGCAAATGCATGTCTCTTTGCTACAAAATTCTGCACATGTTGGAAACTCAACTGTCGGACATAATATTCAAATGGTTCGTCCAGATGCCAACTTTCAGCCTGGTCCCTCCATATCGGTGTCTACTTCTCAGTTATTGAGTAAAGAATCTTTTTCTCGCCCATCAAAGCTCATGAAATTGGATGAGGGAAGGAGTACACCCCTTTCTACTGGGATGTCAGACGTGCCTGTCACTGATGGTCCGTCTCATACCCTTGGAAGAAGCTCATTGCCTGTACTTGCTACTCCTAAAGCAGAAGGGCAATACTCTGAGCTACAATCTTCTCAGCTTCCTCCTGATGTGGAGTCTGTTTTGCTGCAACAAGTATTGAATCTGACACCAGAGCAATTGAGTTCCTTACCACCAGAGCAGCAACAACAGGTAATTCAGCTCCAGCAGGCTCTTCGGCGAGATCAGATGCAGCCCTCATAA 1536 0.4707 MATSQSQHRCVFVGNIPYDATEEQLVEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGTDRNREQGRGGPGMTTNVDPQKQVGGPAGEAVQHQPIGLHIAITAATVMTAALGGAQFGIQSNQNSLQSQSALAHDPLTLHLAKMSRSQLTEMISELKGMATQNKDLARQLLLSRPHLPKALFQAQIMLGMVSSQVLQMPNLRLVSDQPSQSLMNEGQLAQPPLVQTLPGLPPHGQSKLQSGLTPYAQEGQVNTILHNPLAPNQLTAHPKPPVQPRIPVQQHPNNPVLPGTLSGQPNLLLPSLRPGLGSLSVRPPIQPTTSTALNQQMHVSLLQNSAHVGNSTVGHNIQMVRPDANFQPGPSISVSTSQLLSKESFSRPSKLMKLDEGRSTPLSTGMSDVPVTDGPSHTLGRSSLPVLATPKAEGQYSELQSSQLPPDVESVLLQQVLNLTPEQLSSLPPEQQQQVIQLQQALRRDQMQPS 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4446g00005 511 MobiDBLite consensus disorder prediction 83 120 - -
Vium4446g00005 511 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 3 507 - -
Vium4446g00005 511 Gene3D - 1 120 IPR012677 -
Vium4446g00005 511 MobiDBLite consensus disorder prediction 382 444 - -
Vium4446g00005 511 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 87 IPR000504 GO:0003723
Vium4446g00005 511 CDD RRM_CSTF2_RNA15_like 9 85 - -
Vium4446g00005 511 Pfam Hinge domain of cleavage stimulation factor subunit 2 158 228 IPR025742 -
Vium4446g00005 511 MobiDBLite consensus disorder prediction 389 406 - -
Vium4446g00005 511 FunFam Cleavage stimulating factor 64 2 118 - -
Vium4446g00005 511 FunFam Related to Cleavage stimulation factor 464 506 - -
Vium4446g00005 511 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 81 IPR000504 GO:0003723
Vium4446g00005 511 SMART rrm1_1 10 83 IPR000504 GO:0003723
Vium4446g00005 511 MobiDBLite consensus disorder prediction 421 444 - -
Vium4446g00005 511 Pfam Transcription termination and cleavage factor C-terminal 473 505 IPR026896 GO:0031124
Vium4446g00005 511 Gene3D - 464 510 IPR038192 -
Vium4446g00005 511 SUPERFAMILY RNA-binding domain, RBD 5 105 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4446g00005 Vium-Chr4446 18901 25740 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4446g00005 11 84 Eukaryotic Initiation Factors Gene Family AT2G23350 31.081 1.69e-07 52.0