Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4446g00001 ATGGACCATTTCATCTTCCTGGTACTCCTTATACTGTTTCTCATCACCATCAGGTTCATTCTCAACCGCCGCGTTAAGAAAAACCAAGCCCCCGGTCCAACCGGCTTCCCCATAATCGGAAACCTCCACCAACTGGGCCCCAAGCCCCACTGCGCCCTCTCCTCTCTGGCCCAAACCTACGGCCCAATCATGTCCCTCCGTCTGGGCTCAGTCACCGTGGCCGTGGCCTCTTCTCCAGCCGTGGCCCAAGAAATCCTCCAAAAGAACGACCAAGCCTTCGCCAGCCGCCCCATCCCAGAATCCGTGGCGGCCCAGCCCAACGTGGGAGACACCCTAGCCTGGGCCCCCGCCGACTCACGGTGGCGCAACCGCCGCCGCGTCTGCACGACTCAGATTTTTACCGCCCAACGCCTGGACCTGCTACAGCACCTCCGGCACGGGAAAGTACAGGAACTGGTTGAGCACCTTCGGAAGCAAGGTTCGAATGGAAAAGGTGTTCCAATTGGAGATTTGGCATTCGCGACGATGCTGAACCTGGTATCGAACACGGTGTTTTCGGAGGATTTGGTAGATCCGGAGTTCGAGAGTGCGGGGGAGTTTAAGGAGCTGGTGTGGAGGATCATGGAGGATGCAGGGAGGGTTAACCTCTCAGACTACTTTCCTTTGCTGAAACTGTTTGACTTGCAGGGCGTTAAGGGACATGTGGCGGTTTCATACGTCAGGTTGCATGATATTTTCGACCTCATGATTCGGAAACGTGTTGCAGAAAGAGAGGGTCCACGTGTCGCCAAGGGGGATTTCTTGGATGTGTTGCTTGATCAGTGTGAACTAGGTGAGGAGTCCCATTTCACCGTTGAAAGCATTAAGCCGTTGATTCTGGATTTGTTCATAGCGGGGAGTGACACATCAGGATCAACAACAGAGTGGGCAATGGCAGAGCTTCTACGGAACCCAGAAGTAATGCAGAAAGCAAGAGGGGAACTGATGGAAGTGATTGGATCGTCGAATGTTGAAATAACAGAATCAGACATCCCTAGACTTCCGTACATGAGAGCAATAGTGAAAGAAACCCTTCGGCTTCATCCACCTGTTCCCCTTCTCTTGCCGTACGTTGCAGGACACGATGTTGAAGTAAGTGGGTACACCATTCACAAAGGGAACCAAGTTCTCATCAATGCATGGTCCATTGGGAGGAACCCCCAGTTTTGGGATGACCCATTGTCGTTTCAGCCCGAAAGGTTTCTGAGATCCAACATAGATTTCAAAGGCAGGGATTTCGAGTATTTGCCTTTTGGTGCTGGTAGGAGAATTTGCCCTGGCTTGCCACTTGCTAATCGGATGATCACTTTGATGTTGGCTGCGTTTCTGCACTCTTTCCGCTGGGAGCTTCCTCCGGGTGTCACTCCTCAGACCCTTGACATGACTGAGCAGTATGGAATCACCTTGAAGAAGCTTTCTCCTCTTTCTGCTATTCCCATTCCACTCTCAAATTCCCTCTAG 1500 0.5227 MDHFIFLVLLILFLITIRFILNRRVKKNQAPGPTGFPIIGNLHQLGPKPHCALSSLAQTYGPIMSLRLGSVTVAVASSPAVAQEILQKNDQAFASRPIPESVAAQPNVGDTLAWAPADSRWRNRRRVCTTQIFTAQRLDLLQHLRHGKVQELVEHLRKQGSNGKGVPIGDLAFATMLNLVSNTVFSEDLVDPEFESAGEFKELVWRIMEDAGRVNLSDYFPLLKLFDLQGVKGHVAVSYVRLHDIFDLMIRKRVAEREGPRVAKGDFLDVLLDQCELGEESHFTVESIKPLILDLFIAGSDTSGSTTEWAMAELLRNPEVMQKARGELMEVIGSSNVEITESDIPRLPYMRAIVKETLRLHPPVPLLLPYVAGHDVEVSGYTIHKGNQVLINAWSIGRNPQFWDDPLSFQPERFLRSNIDFKGRDFEYLPFGAGRRICPGLPLANRMITLMLAAFLHSFRWELPPGVTPQTLDMTEQYGITLKKLSPLSAIPIPLSNSL 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4446g00001 499 SUPERFAMILY Cytochrome P450 23 492 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4446g00001 499 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 431 440 IPR017972 GO:0005506|GO:0016705
Vium4446g00001 499 PRINTS P450 superfamily signature 429 438 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4446g00001 499 PRINTS P450 superfamily signature 438 449 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4446g00001 499 PRINTS P450 superfamily signature 352 363 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4446g00001 499 PRINTS P450 superfamily signature 298 315 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4446g00001 499 PRINTS E-class P450 group I signature 57 76 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4446g00001 499 PRINTS E-class P450 group I signature 287 304 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4446g00001 499 PRINTS E-class P450 group I signature 438 461 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4446g00001 499 PRINTS E-class P450 group I signature 351 369 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4446g00001 499 PRINTS E-class P450 group I signature 81 102 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4446g00001 499 PRINTS E-class P450 group I signature 428 438 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4446g00001 499 PRINTS E-class P450 group I signature 392 416 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4446g00001 499 PRINTS E-class P450 group I signature 307 333 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4446g00001 499 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 6 494 - -
Vium4446g00001 499 CDD CYP76-like 57 492 - -
Vium4446g00001 499 Pfam Cytochrome P450 31 484 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4446g00001 499 FunFam Cytochrome P450 76C4 21 491 - -
Vium4446g00001 499 Gene3D Cytochrome P450 19 488 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4446g00001 Vium-Chr4446 50 2829 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4446g00001 4 493 Cytochrome P450 AT2G45550 43.574 2.17e-142 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4446g00001 - - vra:106769993 924.08