Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4443g00002 ATGGTGAAAAACACTAACTCTGAAAAAAGTGGCCTTAGGAAAGGAACATGGACCCCAGAGGAAGATAAAAAATTGATTGCTTATGTTACGAGATACGGTCACTGGAATTGGAACCTACTCCCCAAGTTTGCAGGTCTTGAGAGGTGTGGAAAAAGTTGCAGGCTAAGATGGCTGAATTACTTGAGGCCAAATATCAAAAGAGGAAACTACACTAAAGAAGAAGATGATACCATTATCAAACTTCTCCAAAGTCTCGGTAACAGATGGTCTGCCATTGCTGCTCAGCTGCCAGGAAGAACAGACAATGAAATTAAGAATTATTGGCACACCAATCTCAAGAAACGATATCAACTTCTCAAACCTCAAGCCCACTCAAAGGATCAATCACCACACGAACAAGGACCAAACCCTAACAATAATATCGCACCAACTTCTCAATCCATCGATTCAAGCACAACAGCAACATCAACATCAACATCAACATCCTCGTCCCAACTATCTATAACTACTGGTACCAAAGAAAATTTTTTTGATACCATTCCTGATGATGATGATTTTTCTTTTGTGGATGCATACCAACTAGAGCCTGTGAATGAAAGCTTCTTCTTGGAACCATATATGGTTGACATATCGTGCCTTCCTTCTGATATTTTGGTGCCTGAACCCGATTACTTCGGCCCTGTTTCTGACATAGAACTTTGGAGTCACAGTAATATATACTATGCGTGA 729 0.4033 MVKNTNSEKSGLRKGTWTPEEDKKLIAYVTRYGHWNWNLLPKFAGLERCGKSCRLRWLNYLRPNIKRGNYTKEEDDTIIKLLQSLGNRWSAIAAQLPGRTDNEIKNYWHTNLKKRYQLLKPQAHSKDQSPHEQGPNPNNNIAPTSQSIDSSTTATSTSTSTSSSQLSITTGTKENFFDTIPDDDDFSFVDAYQLEPVNESFFLEPYMVDISCLPSDILVPEPDYFGPVSDIELWSHSNIYYA 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4443g00002 242 Gene3D - 68 141 - -
Vium4443g00002 242 CDD SANT 69 112 IPR001005 -
Vium4443g00002 242 CDD SANT 16 61 IPR001005 -
Vium4443g00002 242 MobiDBLite consensus disorder prediction 121 166 - -
Vium4443g00002 242 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 174 - -
Vium4443g00002 242 Gene3D - 14 66 - -
Vium4443g00002 242 MobiDBLite consensus disorder prediction 122 166 - -
Vium4443g00002 242 SMART sant 66 114 IPR001005 -
Vium4443g00002 242 SMART sant 13 63 IPR001005 -
Vium4443g00002 242 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vium4443g00002 242 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vium4443g00002 242 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vium4443g00002 242 FunFam MYB-related transcription factor 13 66 - -
Vium4443g00002 242 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vium4443g00002 242 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vium4443g00002 242 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vium4443g00002 242 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4443g00002 Vium-Chr4443 34327 37995 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4443g00002 1 209 MYB Transcription Factor Family AT1G06180 48.804 1.99e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium4443g00002 Myb_DNA-binding 5.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4443g00002 K09422 - gmx:100810385 319.316