Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4443g00001 ATGGTGAGAACCCCTTGTTGCGACAAAAATGGTCTCAAAAAAGGATCATGGACACAGGAGGAAGACAAGAAGTTGATCGCTTATGTTACCAGGTATGGCCACTGGAATTGGCGCCTGCTCCCCAAGTATGCAGGTCTTGCAAGGTGTGGAAAGAGTTGCAGACTGAGATGGCTGAACTACCTAAGGCCAGATGTGAAAAGAGGGAATTTTAGTGATGAGGAAGAAGAAACCATTGTGAGACTTCACGGAAAGCTTGGTAATAGGTGGTCAACAATTGCTGCTGAATTGCCAGGGAGGAGTGATAACGAGATAAAAAACCACTGGCACACCGTCCTCAAGAAGCGATTTCAACAAAATTCTGTTGGAACAGAAGCCGTTATTTCCGAGTCACTGGAGACCTTATCAGAGAACTACAGTGACCTCAACACAACAAGCGATACTTCTGTTGCTGCTTCGGCTGCAGCAGCAACCGCCACAAATGATGAAAGTTATGATGGTCTTTCTGGTTTGGATGCATACACGGAGCCTCTGTCTGTAGATTTCTGGACAGAACCTTATTTAGTTGACAACTCCTATGTCCCACCCGAGTCGGAACCCGTTTACTTCAGTCCTATGTACGAAGTTGAAATTTGGAACCAGAATGAGCTGTTCCTACAGGAATGTGAGGGTTTATTCCAATGGTGA 684 0.4561 MVRTPCCDKNGLKKGSWTQEEDKKLIAYVTRYGHWNWRLLPKYAGLARCGKSCRLRWLNYLRPDVKRGNFSDEEEETIVRLHGKLGNRWSTIAAELPGRSDNEIKNHWHTVLKKRFQQNSVGTEAVISESLETLSENYSDLNTTSDTSVAASAAAATATNDESYDGLSGLDAYTEPLSVDFWTEPYLVDNSYVPPESEPVYFSPMYEVEIWNQNELFLQECEGLFQW 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4443g00001 227 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vium4443g00001 227 CDD SANT 69 112 IPR001005 -
Vium4443g00001 227 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vium4443g00001 227 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vium4443g00001 227 CDD SANT 16 61 IPR001005 -
Vium4443g00001 227 Gene3D - 7 66 - -
Vium4443g00001 227 SMART sant 13 63 IPR001005 -
Vium4443g00001 227 SMART sant 66 114 IPR001005 -
Vium4443g00001 227 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vium4443g00001 227 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vium4443g00001 227 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vium4443g00001 227 FunFam MYB-related transcription factor 13 66 - -
Vium4443g00001 227 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 145 - -
Vium4443g00001 227 Gene3D - 69 137 - -
Vium4443g00001 227 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4443g00001 Vium-Chr4443 2538 6098 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4443g00001 1 191 MYB Transcription Factor Family AT2G31180 51.795 2.74e-63 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium4443g00001 Myb_DNA-binding 2.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4443g00001 K09422 - gmx:100815765 295.819