Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4441g00004 ATGAACTTCAGGGCACTCCTACTCTTCCTGGCCTTTATGGTGACAAAGTCAGTAGCAGTAGTGGAGAAGCAGACATACATAGTACACATGGACAAGACCAAGATGGAAGCCTCAGTCCATTCCCAAGGCTTGGCAAAACCTTGGTTCAAATCAGTCATTGATTTCATCTCTGAAGCTTCATTCGAAGAAGAAGAAGGAGGAGAACCTCAACTCCTTTATGTTTATGAAACCAGCCTTTTTGGTTTTGCTGCTCAACTTTCAAATAAGCAGCTTGAGTACTTGAACCAAGTGGATGGCTTCGTTGCAGCATTACCTGATGAACTATTGACCCTTCACACAACCTACACCCCCCATTTTCTTGGCCTGCAGGAGGGAGAAGGACTTTGGAGTGCTTCTAACTTGGCCTCAGATGTGATCATAGGAGTCCTTGATACAGGAATATGGCCTGAACACATCAGTTTCCAAGACACCGGTTTGTCCAAAGTACCCTCTCGGTGGAAAGGAGCTTGTGAAGCAGGCACCAATTTCTCTGCCTCAAGTTGTAACAAGAAGCTTGTTGGTGCAAGAGTCTTTCTTCAAGGGTATGAAAAATTTGCAGGAAGGATCAATGAAACCATGGACTATCGTTCTGCTAGAGATGCTCAAGGACATGGATCACACACAGCCTCAACGGCAGCTGGAAACATGGTGAAGAATGCCAGCTTTTTCGGCTTGGCCAGTGGTTCAGCCAGTGGAATGAGGTATACCTCAAGAATAGCTGCTTATAAAGTATGCTGGCGTTTAGGCTGTGCTAACTCTGACATATTAGCAGCTATTGACAAAGCTGTTGCTGATGGTGTTGATGTACTGTCACTCTCATTAGGTGGCAGTGCCAGACCTTATTACAGCGATAGCATTGCCATAGCCTCATTTGGAGCAACACAAAACGGTGTTTTTGTTTCTTGCTCGGCAGGCAATTCAGGCCCTTTTAGTTCTACTGTTGGAAATGTTGCCCCGTGGATCATGACTGTTGCTGCTAGCTACACTGATAGGAGCTTTCCAACTCAAGTGAAGCTTGGAAATGGAAAGCTTTTCAAAGGGTCATCATTGTACAAGGGCAAGAAAACTAACCAATTGCCTCTTGTTTATGTCAATTCCTCAAAAGAACATAGGACAGCACAGTATTGCACCAGAGGTTCTCTTGATCCAAAGTTTGTCAAAGGAAAAATAGTTGCCTGCGAACGTGGAATAAACAGTAGAACTGCAAAGGGAGAAGAAGTAAAGATGGCAGGTGGAGCAGGAATGATACTACTCAACTCAGAAAACCAGGGAGAAGAACTTTTTGCTGACCATCATGTTTTGCCAGGCACATCTTTAGGGGCCTCTGCAAGTAAAATAATCAGAAGCTACATTCACTCAGCAAAAGCACCAACAGCTTCAATATCCTTCCAAGGGACAGCATATGGAGACCCTGCACCAGCTATGGCAGCATTTTCTTCTAGAGGACCAAGTGCAGTAGGAGGAGATGTGATCAAACCAGATGTTACTGCACCTGGTGTGAACATCTTGGCTGCTTGGCCTCCCATAACTAGTCCAAGCATGCTCAAGAGCGACAAAACAAGTGCAGTATTTAACATAGTCTCAGGTACCTCAATGTCATGTCCTCATGTTAGTGGTATAGCAGCCTTGATCAAATCTGCGCACAATGGTTGGTCACCTGCAGCCATCAAATCTGCTCTGATGACTACTGCTTCTGTATCAAACAACAAAGGTGCTGCAATTGCTGACTATGGTTCAAAAAATTCAGCACTTGCTGACCCCTTTGCATTTGGTTCAGGCCATGTTAACCCTGAAAGAGCTTCTGATCCAGGATTGGTCTATGACATCACCACCAAAGATTACCTAAATTACTTGTGCAGCCTGAAATACACACCCTCCCAGATTGCTTTATTGTCAAAAGGTAATTTTACATGCCCCAAAAAATCAGCTCTTCAAGCTGGTGACTTGAACTACCCCTCATTTGCTGTGCTATTTGGCACAAGGGCTCTAAAGGCTAGTGTGACATTCAAGAGGGTAGTTACAAATGTAGGAAAGCCCAAAATTTCTTATGCAGTGAAGGTGGAAGAACCAAATGGAGTATCTGTTAGGGTTGAACCAAGGAATATCAGTTTCAGAAAAACTGGTCAAAAAATGAGTTATAAGGTGAGTTTTGTTTCAAATGGGAATACAACAGTTACTGGAAACTCATCATTTGGATCACTTACTTGGGTATCAGGTAAATATGCTGTTAGAAGCCCTATAGCAGTGACATGGAAATGA 2298 0.4378 MNFRALLLFLAFMVTKSVAVVEKQTYIVHMDKTKMEASVHSQGLAKPWFKSVIDFISEASFEEEEGGEPQLLYVYETSLFGFAAQLSNKQLEYLNQVDGFVAALPDELLTLHTTYTPHFLGLQEGEGLWSASNLASDVIIGVLDTGIWPEHISFQDTGLSKVPSRWKGACEAGTNFSASSCNKKLVGARVFLQGYEKFAGRINETMDYRSARDAQGHGSHTASTAAGNMVKNASFFGLASGSASGMRYTSRIAAYKVCWRLGCANSDILAAIDKAVADGVDVLSLSLGGSARPYYSDSIAIASFGATQNGVFVSCSAGNSGPFSSTVGNVAPWIMTVAASYTDRSFPTQVKLGNGKLFKGSSLYKGKKTNQLPLVYVNSSKEHRTAQYCTRGSLDPKFVKGKIVACERGINSRTAKGEEVKMAGGAGMILLNSENQGEELFADHHVLPGTSLGASASKIIRSYIHSAKAPTASISFQGTAYGDPAPAMAAFSSRGPSAVGGDVIKPDVTAPGVNILAAWPPITSPSMLKSDKTSAVFNIVSGTSMSCPHVSGIAALIKSAHNGWSPAAIKSALMTTASVSNNKGAAIADYGSKNSALADPFAFGSGHVNPERASDPGLVYDITTKDYLNYLCSLKYTPSQIALLSKGNFTCPKKSALQAGDLNYPSFAVLFGTRALKASVTFKRVVTNVGKPKISYAVKVEEPNGVSVRVEPRNISFRKTGQKMSYKVSFVSNGNTTVTGNSSFGSLTWVSGKYAVRSPIAVTWK 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4441g00004 765 CDD Peptidases_S8_3 109 578 IPR034197 -
Vium4441g00004 765 Pfam PA domain 373 456 IPR003137 -
Vium4441g00004 765 ProSiteProfiles Serine proteases, subtilase domain profile. 114 614 - -
Vium4441g00004 765 CDD PA_subtilisin_like 350 474 - -
Vium4441g00004 765 SUPERFAMILY Subtilisin-like 111 618 IPR036852 GO:0004252|GO:0006508
Vium4441g00004 765 Pfam Peptidase inhibitor I9 25 112 IPR010259 -
Vium4441g00004 765 Gene3D Peptidase S8/S53 domain 137 627 IPR036852 GO:0004252|GO:0006508
Vium4441g00004 765 FunFam Subtilisin-like protease SBT1.5 137 355 - -
Vium4441g00004 765 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 26 762 IPR045051 -
Vium4441g00004 765 Pfam Fibronectin type-III domain 661 762 IPR041469 -
Vium4441g00004 765 Gene3D - 631 764 - -
Vium4441g00004 765 ProSitePatterns Serine proteases, subtilase family, serine active site. 542 552 IPR023828 -
Vium4441g00004 765 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 140 151 IPR023827 -
Vium4441g00004 765 FunFam subtilisin-like protease SBT1.5 343 481 - -
Vium4441g00004 765 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 13 112 IPR037045 -
Vium4441g00004 765 Gene3D - 343 481 - -
Vium4441g00004 765 Pfam Subtilase family 136 584 IPR000209 GO:0006508|GO:0008236
Vium4441g00004 765 FunFam Subtilisin-like protease SBT1.5 631 765 - -
Vium4441g00004 765 PRINTS Subtilisin serine protease family (S8) signature 541 557 IPR015500 -
Vium4441g00004 765 PRINTS Subtilisin serine protease family (S8) signature 135 154 IPR015500 -
Vium4441g00004 765 PRINTS Subtilisin serine protease family (S8) signature 213 226 IPR015500 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4441g00004 Vium-Chr4441 55133 58137 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4441g00004 22 765 Subtilisin-like Serine Gene Family AT1G01900 55.764 0.0 840
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4441g00004 - - gmx:100817581 1297.34