Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4441g00002 ATGGCTTCTTCTTCATCTTCTTCTTCTTCACTAATCTTCATGTCCATCCTCCTCCTCCTCTTGTACCTCCACTCTTCGGCGGCGCTCCCCCTCTCCGTGGAGAGACCCGACGAAGACGTGATAGTTTCGTCGCCGAAGGGGACGTTCACGGCGGGGTTCAGGAACGTGGGGGAGAACGCGTACTGCTTCGGCGTGTGGTTCTCGCAGGCGGAGAAGCACGTGGTTTGGATGGCCAACCGCGACGTTCCGGTGAACGGGAAACGCTCCTCGCTCTCCCTGCTCAAGAACGGCAACCTCGTGTTGTCTGACGCCGGACAGTTCGACGTTTGGGACACCAAGACTCTGTCGGAGCAGCCGTTGGAGTTGCATTTGCACGACACCGGGAACCTCGTGCTCCGGGAACAGACCAATAGAAGCTCTGTTTTGTGGGAAAGCTTTAATTTTCCGACTGATACACTCCTCCCTGGCCAGCTTCTCACCAGGTTCACGAAGCTAGTCTCTGCGAGAAGTGAGGGCAACTATTCCTCTGGGTTTTACAAGCTCTTCTTCGACAACGACAACGTTTTCCGTCTTTTGTACGAGGGTCGTCAAGTTTCAAGCGTTTATTGGCCGGATCCTTGGCTGGTTAGCAACAACGTTGGGTTTGGTAACGGAAGAACCTCGTACAATAGTAGCAGAGTTGCAGTTCTAGATGATTTGGGTCTATTCAGTGTTTCTGATAAATATAGTTTAACGACAATTGATTATGGGTTACTCCTTCAACGAAGGTTGACCCTTGACTATGATGGCAATGTTCGTATCTATAGCAGAGAAAACGGTCAAGAAGATTGGTCAATAGCAGGGCAATTTAAATCACAACCTTGTTTCATTCATGGGATCTGTGGACCTAACAGTATATGCAGTCATGATAAAGCAATTGGTAGAAAGTGTGAGTGTCTTGAAGGATATAGCTGGGTTGATAGCCAAGATTGGTCTTTGGGTTGCACACCAAAATTCAAAACTACCTGTGATAACAAGACAGAATATCGCGTAGTGCCTCTCTATGAAGTGGACTTTTATGGATATGACTATGGAACTTCCTTTCAAAATTACACATATAAACAATGTGAGAAACTGTGCTTGGAGGTGTGCGAGTGCTTGGGCTTTCAGTACAGCTTTGCTGTAGAGAATGGGAACTTTTGGTGTTACCCAAAGACGCAGTTGCTAAATGGACACCATTCACCCGGTTTCCCAGGGCAATTTTTCGTGCGTCTGCCAAAAGAAAGTGCTCAAGAGAACCACCTGCAAAACAATGATGGCTTGGTTTGTCCGAGAAATGCAGAAATGCTACTAGAAAGACCATATGTGAAAGGCAAGGAAAATGGGTCTGTGAAGTTCATGCTTTGGTTTGCAGTTGGCTTAGGAGGGTTTGAGGCGGTGTGCATCTTTATGGTGTGGTGTTTCTTGTTTAGGAGTAGCGACCATTTGGTCAGGGCAGACCAACAAGGGTATGTTCTTGCTGCAGCTACAGGGTTCAGAAGGTACACATACTCTGAACTGAAACAAGCCACAAAGGGTTTCAGTGAAGAGATCGGAAGGGGTGCAGGAGGGACAGTGTACAAGGCTGTGTTATCGGATAACCGAGTTGCAGCAATAAAAAAGCTGCACGAATTTGCGGACCAAGGAGAGAGTGAGTTCCTCACTGAAATGAGCATCATTGGAAGGCTCAATCACATGAACTTGATCGGCATGTGGGGTTATTGTGTGGAAGGAAAACACAGGATCCTGGTTTATGAGTACATGGAAAACGGCTCTTTGGCTAATAATCTTCCATCAAATTCACTTGATTGGAGGAAGAGGTACAACATTGCAATGGGAATGGCAAAGGGTTTGGCCTATTTACATGAAGAGTGCTTGGAGTGGATCTTGCACTGTGATATCAAGCCTCAAAACATACTTCTTGACTCTGATTACCAACCCAAGGTGGCTGATTTTGGCTTGTCCAAGCCATTGAATAGAAACAACCTCAACAACTCAAGCTTCTCTAGAATAAGAGGCACAAGGGGTTACATGGCACCAGAATGGGTTTTCAACTTGCAAATCACTTCCAAGGTTGATGTTTATAGCTATGGAATTGTTGTGTTGGAGATGATAACTGGGAGGAGTCCAATGATTGGAGTCCAAGTGACAGAACCAGGGCAAGAGTCGCATAATGAGAGGTTGGCAACATGGGTGAGGGAGAAAAGAAGGAAAACACCAGAAGGAACATCTTGGGTGGAACAAATTGTTGACCCCACTTTAGGATCAGATTACAACATGAAGCAGTTAGAGATTTTGGCAACGGTGGCTTTGGAATGTGTAGAGGAAGAGAAAGATGTGAGACCTAGCATGAGTCAAGTCGTTGAAAGACTCCAAAATCATGAACACGGTTCTTGA 2415 0.4629 MASSSSSSSSLIFMSILLLLLYLHSSAALPLSVERPDEDVIVSSPKGTFTAGFRNVGENAYCFGVWFSQAEKHVVWMANRDVPVNGKRSSLSLLKNGNLVLSDAGQFDVWDTKTLSEQPLELHLHDTGNLVLREQTNRSSVLWESFNFPTDTLLPGQLLTRFTKLVSARSEGNYSSGFYKLFFDNDNVFRLLYEGRQVSSVYWPDPWLVSNNVGFGNGRTSYNSSRVAVLDDLGLFSVSDKYSLTTIDYGLLLQRRLTLDYDGNVRIYSRENGQEDWSIAGQFKSQPCFIHGICGPNSICSHDKAIGRKCECLEGYSWVDSQDWSLGCTPKFKTTCDNKTEYRVVPLYEVDFYGYDYGTSFQNYTYKQCEKLCLEVCECLGFQYSFAVENGNFWCYPKTQLLNGHHSPGFPGQFFVRLPKESAQENHLQNNDGLVCPRNAEMLLERPYVKGKENGSVKFMLWFAVGLGGFEAVCIFMVWCFLFRSSDHLVRADQQGYVLAAATGFRRYTYSELKQATKGFSEEIGRGAGGTVYKAVLSDNRVAAIKKLHEFADQGESEFLTEMSIIGRLNHMNLIGMWGYCVEGKHRILVYEYMENGSLANNLPSNSLDWRKRYNIAMGMAKGLAYLHEECLEWILHCDIKPQNILLDSDYQPKVADFGLSKPLNRNNLNNSSFSRIRGTRGYMAPEWVFNLQITSKVDVYSYGIVVLEMITGRSPMIGVQVTEPGQESHNERLATWVREKRRKTPEGTSWVEQIVDPTLGSDYNMKQLEILATVALECVEEEKDVRPSMSQVVERLQNHEHGS 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4441g00002 804 Gene3D Transferase(Phosphotransferase) domain 1 594 803 - -
Vium4441g00002 804 SUPERFAMILY Protein kinase-like (PK-like) 502 797 IPR011009 -
Vium4441g00002 804 ProSitePatterns Protein kinases ATP-binding region signature. 524 547 IPR017441 GO:0005524
Vium4441g00002 804 CDD PAN_AP_plant 332 419 - -
Vium4441g00002 804 SMART blect_4 32 149 IPR001480 -
Vium4441g00002 804 SMART serkin_6 518 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4441g00002 804 FunFam S-receptor-like serine/threonine-protein kinase 487 593 - -
Vium4441g00002 804 CDD B_lectin 43 149 IPR001480 -
Vium4441g00002 804 ProSiteProfiles Protein kinase domain profile. 518 803 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4441g00002 804 Pfam D-mannose binding lectin 74 160 IPR001480 -
Vium4441g00002 804 Pfam Protein kinase domain 521 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4441g00002 804 Gene3D - 34 147 IPR036426 -
Vium4441g00002 804 CDD STKc_IRAK 524 799 - -
Vium4441g00002 804 PANTHER OS07G0415500 PROTEIN 6 798 - -
Vium4441g00002 804 FunFam Serine/threonine-protein kinase 594 804 - -
Vium4441g00002 804 Pfam S-locus glycoprotein domain 254 317 IPR000858 GO:0048544
Vium4441g00002 804 SUPERFAMILY alpha-D-mannose-specific plant lectins 63 204 IPR036426 -
Vium4441g00002 804 Gene3D Phosphorylase Kinase; domain 1 485 593 - -
Vium4441g00002 804 ProSiteProfiles Bulb-type lectin domain profile. 25 145 IPR001480 -
Vium4441g00002 804 PIRSF SRK 2 803 IPR024171 GO:0004674
Vium4441g00002 804 ProSitePatterns Serine/Threonine protein kinases active-site signature. 635 647 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4441g00002 Vium-Chr4441 18750 21650 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4441g00002 481 804 Trihelix Transcription Factor Family AT5G38560 38.602 1.90e-66 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vium4441g00002 Pkinase 7.9e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4441g00002 - - gmx:100806357 1370.14