Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4441g00001 ATGCAGAACTTTTACATTGTTTTCCTGGGAGATCATGCTGGGAGTAGAGACATAGCTCTAGACGCCCATTTAAATATTCTCTCTGCTGTTAAAGGAAGCATCCTTGAAGCCAAAGAATCCATGGTATACAGCTACACAAAGAGCTTTAATGCATTTGCTGCTAAATTGTCCGAGGATGAAGCTAAGAATTTGTCTGCCATGGATGAAGTAGTTTCTGTTATTCCAAATCAGTACCGCAAGCTACACACAACAAGATCATGGGACTTCATAGGATTACCTTTGACTGCTAAGAGAAAACTGAAATCAGAAAGTGACATAATTGTGGCTCTTTTGGATACAGGGGTCACTCCTCAGCTTCAAAGCTTCAAGGACGATGGATTTGGTCCTCCACCTGCAAAGTGGAAAGGAACTTGTGATAAATATGCAAATTTTTCAGGCTGCAATAACAAGCTGATAGGAGCCAGATATTTCAAGATTGGTGGAAGGCCTGATCCATCTGACATATTATCCCCCATAGATGTGGTTGGTCATGGAACTCATACTGCATCAACAGCAGCAGGAACTGTTGTCCCAGATGCAAGTCTCTTTGGCATAGCCAAAGGAAAGGCTCGTGGTGCTGTGCCATCAGCCAGATTGGCAGTTTACAAAGTCTGCTGGGCGAGTGATGATTGTGCAGACATGGACATACTAGCAGCATTTGAAGCTGCTATACATGATGGTGTTGATGTCATATCCATTTCCATTGGTGGAGGGAATCCAAATTATGTGCAGGACTCTATAGGAATTGGATCATTTCATGCCATGAGGAAAGGCATAATCACTGTGGCCTCAGCTGGAAATGATGGACCATTCATGGCAACTGTCACAAATACTGCACCATGGATTGTAACAGTGGCTGCTAGTGCCATTGATAGGGATTTCAGGAGCACTATTCAGTTGGGAAATGGAAAGAATTTTTCTGGGGGAGGGCTGACCACCTTCAATCCAAAACAAAAACAGTACCCCCTTGTCAATGGGACTGATGCAGCCAGAAACTCTGGAAGCAAGGAAAATGCTAGGTTCTGCTTTGAAGACTCCTTGGATCCAAATAAGGTGAAAGGAAAACTTGTATACTGTAGTTTAAGTGGCTGGGGCAGTGAATCTGTTGTGAAAGGAATTGGTGGCATTGGTACTATAATGGAAACTGACCAAGTTTTTGAAATTGCCCAAATATTCATGGCTCCAGCTACCATAGTGAATAGTAGCATAGGTCAAATTATTATCAATTATACACACTCCACAAGATCGCCATCAGCATTAATACATAAGACCCACGAAGTAAAGATTCCAGCTCCATTTACTGCTTCATTTTCATCTAGGGGTCCAAATCCAGCATCTAAACATATTCTCAAGCCAGATGTTACAGCTCCTGGCCTTAACATCTTGGCATCTTATACACCTATGAAGTCAATTACTGGAGAGAAAGGAGATACCCAGTTTTCTGAATTTACACTTATGTCTGGAACTTCTATGGCATGCCCTCATGTTTCTGGTGTAGCAGCATATGTGAAATCATTTCACCCCAATTGGTCTCCTGCTGCAATAAGATCAGCCATTATTACTACAGCTAAACCTATGAGCCAGAGAATTAACAAGGAGGCAGAATTTGCCTATGGTGCTGGTCAAGTGAGCCCTACAAGAGCTGTGAGCCCTGGTTTAGTCTATGACATGGATGACTTTGCATATGTTCAGTTTTTATGCCATGAGGGCTATAATGGTTCCACTCTATCAGTGTTAGTTGGCTCTCCTGTGAACTGCACCTCTTTGCTTCCTGGACTTGGCCATGATGCTCTCAACTACCCCACCATGCAACTTAGTGTGGAAAACAACTCAGGCACAACAGTAGGAGTTTTCAGGAGAAGAGTGACCAATGTTGGTCCTGCTCCAACCATCTTCAATGCCACCATCAAATCTCCCAAAGGAGTGGAGATCACAGTGAAACCTGCAAGCCTCATTTTCTCTCATACTCAGCAGAAGAAGAGTTTCAAGGTAGTGGTGAAAGCAAAATCTATGGCAAGCATGAAAATAGTATCAGGTTCCCTTATTTGGAGAAGCACACGTTACATTGTTAGGAGCCCTATTGTTATCTATAGTCCATAA 2139 0.4282 MQNFYIVFLGDHAGSRDIALDAHLNILSAVKGSILEAKESMVYSYTKSFNAFAAKLSEDEAKNLSAMDEVVSVIPNQYRKLHTTRSWDFIGLPLTAKRKLKSESDIIVALLDTGVTPQLQSFKDDGFGPPPAKWKGTCDKYANFSGCNNKLIGARYFKIGGRPDPSDILSPIDVVGHGTHTASTAAGTVVPDASLFGIAKGKARGAVPSARLAVYKVCWASDDCADMDILAAFEAAIHDGVDVISISIGGGNPNYVQDSIGIGSFHAMRKGIITVASAGNDGPFMATVTNTAPWIVTVAASAIDRDFRSTIQLGNGKNFSGGGLTTFNPKQKQYPLVNGTDAARNSGSKENARFCFEDSLDPNKVKGKLVYCSLSGWGSESVVKGIGGIGTIMETDQVFEIAQIFMAPATIVNSSIGQIIINYTHSTRSPSALIHKTHEVKIPAPFTASFSSRGPNPASKHILKPDVTAPGLNILASYTPMKSITGEKGDTQFSEFTLMSGTSMACPHVSGVAAYVKSFHPNWSPAAIRSAIITTAKPMSQRINKEAEFAYGAGQVSPTRAVSPGLVYDMDDFAYVQFLCHEGYNGSTLSVLVGSPVNCTSLLPGLGHDALNYPTMQLSVENNSGTTVGVFRRRVTNVGPAPTIFNATIKSPKGVEITVKPASLIFSHTQQKKSFKVVVKAKSMASMKIVSGSLIWRSTRYIVRSPIVIYSP 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4441g00001 712 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 37 708 IPR045051 -
Vium4441g00001 712 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 1 82 IPR037045 -
Vium4441g00001 712 CDD Peptidases_S8_3 80 536 IPR034197 -
Vium4441g00001 712 FunFam Subtilisin-like protease SBT1.5 105 326 - -
Vium4441g00001 712 Pfam Fibronectin type-III domain 611 709 IPR041469 -
Vium4441g00001 712 ProSiteProfiles Serine proteases, subtilase domain profile. 86 562 - -
Vium4441g00001 712 SUPERFAMILY Subtilisin-like 81 566 IPR036852 GO:0004252|GO:0006508
Vium4441g00001 712 Pfam Peptidase inhibitor I9 5 82 IPR010259 -
Vium4441g00001 712 Gene3D Peptidase S8/S53 domain 105 572 IPR036852 GO:0004252|GO:0006508
Vium4441g00001 712 FunFam Subtilisin-like protease SBT5.3 1 82 - -
Vium4441g00001 712 CDD PA_subtilisin_like 310 434 - -
Vium4441g00001 712 ProSitePatterns Serine proteases, subtilase family, serine active site. 501 511 IPR023828 -
Vium4441g00001 712 Pfam Subtilase family 104 554 IPR000209 GO:0006508|GO:0008236
Vium4441g00001 712 Gene3D - 579 711 - -
Vium4441g00001 712 Gene3D - 304 440 - -
Vium4441g00001 712 PRINTS Subtilisin serine protease family (S8) signature 103 122 IPR015500 -
Vium4441g00001 712 PRINTS Subtilisin serine protease family (S8) signature 173 186 IPR015500 -
Vium4441g00001 712 PRINTS Subtilisin serine protease family (S8) signature 500 516 IPR015500 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4441g00001 Vium-Chr4441 11290 15494 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4441g00001 2 550 Subtilisin-like Serine Gene Family AT4G00230 64.117 0.0 719
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4441g00001 - - ccaj:109800351 1250.34