Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4440g00007 ATGAACGAAGAAGAGACCAAGGGTTCTGCTTTTTTGGGCACCAACACCGCTTATTCAGGTTTTCTTCTTGACCCTGCAAAATGGGGTGTGCTGAGTTTGCCGGAAAAGCAAAGACTAGTCCATGAGATTGCACGACAGTCAAAAGATGCCTCTACTATGCTTCAGACATTTACACGCAGGGAACTTCTAGAAATAATCTGTGCTGAATTAGGCAAAGAGAGGAAGTATACAGGCTATACCAAGAGTCAAATGATAGAACATCTTTTGAAGATAATTTCTAAGAACTCGAACTTGCACGTAACCGGAAATATGCCAGCTCCTACCAGAAGTTGCATTGGATCTAAAAGGAAAAAGAAACCTGCATCTGAGGATTTACACCATGCTCCTCTAGAGAACATTAAAGAGGAAGTAGTGAAAACCTTTTTGTGTCAAAATGTCGCATGCAAAGCTACATTGAATCCAGACGACTCTTTTTGCAAGAGATGTTCTTGTTGCATATGTCATTGCTATGATGATAACAAGGATCCAAGTTTGTGGTTGACTTGCAGCTCTGATCTTCCCAATGAGGAGTCATGTGGAATGTCCTGTCATTTGCAATGTGCTTTGAGTAGTCAAATGTCTGGCAATTTGAAGGGTAGTTGTGGTATTAAGTTAGATGGAGCCTTCTGTTGTGTTTCTTGTGGAAAAAGTAATGAACTGATGAAGACATGGAGAAAGCAATTATTGGTTGCCAAAGAAGCAAGAAGAATGGATATACTGTCTTTGCGAATATCCCTGGCTCACAGAATTCTTGTAGGAACAGAAATGTACAAGGAACTGCAAAAGATTGTAGAAACTGCTCTCAAATTACTGGAGAATGAAGTGGGATCACTCGATCATGTATATGCGAGGATGACTCGTGGAATTGTAAGCCGGCTTTCATGTGGTGCTGAGGTTCAGAGATTGTGCTCAGCTGCAATTGAATGTTTTGATTCAAAGTTTTCTGACCTTTTCTCTGTTTCTGTGGAAAAGAAAGATGCACCAACATGTTCAATTCGTTTTGAAGAGTGTCTTCCTACTTCAGTGGTTATCGTGCTGGAGTACAATGACAAACTTTTAAAGAACTTTCTAGGCTGCAGGCTTTGGCACAGAGTATCAACTACAGACTACCCTGAACAACCCACCTTCATCGTCTTGAGGCCGGAGAAAAGATTCAAGTTAGAAAACCTGCACCCTTCAACTGAGTACTTTTGCAAGGCTTCTCTGTTCAGCAGCACAGGGATTTTGGGTGCTGCAGAGGCTAAATGGGTGACCCAGTGTGAGCCCACCAATTCTGCAAAAGGAATAAGTTGTGGGGGAAATCGTTTTAGAGTGGAAATGTGTGGTCAGGATCATATAACTGCCGAAACTCATCATCCCACAGAGTCTGCCAACTCCGACATGAAGTTATCATCTCGACAACAACCTGGGAAACCCATGAGTTTGAACATCAGAGGAAGGTTTGAAGAGTTCCTGTCGAAGCCTCAGTGTTTAGAGCCTTTTGCATATAAAAATTTTGCTGCTGCAGTTTCACCTTCGACACCTTGTAAATCCTACGAGATGAGGCAAATTCCTGGTTTGAATGGTAGAAAGCGGTCGAAGGAAAATGACTACGAGTATTCGGTGAGGGTGGTGAAATGGTTGGAGCATCTAGGGCACATAGATGAAATCTTCAGAGTGAGATTTCTGACTTGGTTCAGCCTTAAGGCTACTCAACAGGAGAGAAGGGTGGTTAGTGCTTTTGTTGATGCATTGATCGACGACCCAGCAAGCTTAGCAGACCAGCTCATACACACTTTCAGCGATGAAATATGTTGCGAGCAAAAACCCTTGTGA 1854 0.4256 MNEEETKGSAFLGTNTAYSGFLLDPAKWGVLSLPEKQRLVHEIARQSKDASTMLQTFTRRELLEIICAELGKERKYTGYTKSQMIEHLLKIISKNSNLHVTGNMPAPTRSCIGSKRKKKPASEDLHHAPLENIKEEVVKTFLCQNVACKATLNPDDSFCKRCSCCICHCYDDNKDPSLWLTCSSDLPNEESCGMSCHLQCALSSQMSGNLKGSCGIKLDGAFCCVSCGKSNELMKTWRKQLLVAKEARRMDILSLRISLAHRILVGTEMYKELQKIVETALKLLENEVGSLDHVYARMTRGIVSRLSCGAEVQRLCSAAIECFDSKFSDLFSVSVEKKDAPTCSIRFEECLPTSVVIVLEYNDKLLKNFLGCRLWHRVSTTDYPEQPTFIVLRPEKRFKLENLHPSTEYFCKASLFSSTGILGAAEAKWVTQCEPTNSAKGISCGGNRFRVEMCGQDHITAETHHPTESANSDMKLSSRQQPGKPMSLNIRGRFEEFLSKPQCLEPFAYKNFAAAVSPSTPCKSYEMRQIPGLNGRKRSKENDYEYSVRVVKWLEHLGHIDEIFRVRFLTWFSLKATQQERRVVSAFVDALIDDPASLADQLIHTFSDEICCEQKPL 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4440g00007 617 CDD PHD_VIN3_plant 163 227 - -
Vium4440g00007 617 MobiDBLite consensus disorder prediction 465 483 - -
Vium4440g00007 617 Pfam PHD - plant homeodomain finger protein 143 262 IPR032881 -
Vium4440g00007 617 PANTHER VIN3-LIKE PROTEIN 2-RELATED 21 473 IPR044514 GO:0010048|GO:0040029
Vium4440g00007 617 MobiDBLite consensus disorder prediction 464 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4440g00007 Vium-Chr4440 45190 49430 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4440g00007 23 610 PHD Gene Family AT5G57380 34.262 4.93e-103 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4440g00007 - - gmx:100785502 1085.48