Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4439g00001 ATGGATCACAGCAACACGTTTTCCTCTTCGTTCCTTCTGCTAACCCTGTTGGGGTTTCACGTGTTCCTCGCTTCGTCGCAGGTCGAGGACGATGTCAAATGTCTCAGTGGCATCAAGGAAGCTGTTTCGGATCCGCAGGGCCACCTTTCCCTGTGGCGGTTCGAGAACACCACTGTGGGTTTCATCTGCGACTTCGTGGGTGTGACTTGCTGGAACCAAAGGGAGAACCGGGTCTTGAGTTTGGACTTCCAAGATTTCAAACTTTCGGGTCGGATCCCCGAGGCTTTGCAGTACTGTGGGAAGAGCCTCCAAAGGTTGAATCTTGCTTCAAATTCTTTCTCCTCCGAGATCCCGCACGAGATCTGCAAGTGGATGCCGTTTTTGGTTGCTCTAGATTTGTCTGGTAACCAACTCTCTGGGCCTATTCCTCCCACACTTGTGAATTGTTCATATTTGAATGAGTTGATGTTGTCGGATAACCAGCTCTCTGGGTCAATCCCCTTTGAGCTGGGGAGTTTGAGTAGGCTCAAGAAGTTTTCTGTGGCCAATAATAGACTTAGTGGGACAATTCCTGAGTTTTTCCATGGGTTTGAAAGGGAGGGTTTTGAGGGGAACAGTGGGTTATGTGGGTGTCCTCTCGGATCCAAGTGTGGTGGGATGAGTAAGAAGAACCTTGCTATTATCATTGCTGCTGGGGTGTTTGGCGCTGCTGCTTCATTGTTGCTGGCTTTTGGCCTGTGGTGGTGGTACCATTTGGGTGGGAAGAAGAAGAAGAAGGGATATGGGGTTGGTTCTAGCGTGGGTGCTGCTGGTGATTGGGCTTTGAGGCTAAGAGGGTATAAGCTTGTGCAAGTTAGTCTCTTTCAGAAGCCTATTGTGAAGGTGAAGTTGGGGGATTTGATGGCTGCTACCAATAATTTCAGTGGGCAGAATGTTCTTTTTGCGACAAGAACAGGGACAACGTACAAGGCTGATCTCCCAGATGGTTCCACGCTAGCAGTGAAGCGGTTGAGTGCGTGTAGGATTGGGGAGAAGCAGTTTGGGATGGAGATGAACCGGTTGGGGCAGGTTAGGCACCCAAATTTGGCTCCTCTGTTGGGGTACTGTGTGGTGGAGGAGGAGAAGTTGTTGGTTTACAAGCACATGTCTAATGGAACTTTGTATTCCTTGTTGCACAAGAATGGTGGGGTGCTGGATTGGTTGATGAGGTTCAGGATTGGGTTAGGAGCTGCAAGGGGGCTTGCATGGCTGCACCATGGCTGCCACCCTCCCATTATACAGCAGAACATTTGCTCCAATGTGATTCTTGTTGATGAGGAGTTTGATGCTCGGTTGATGGACTTTGGGCTAGCCAGGCTCATGGCTTCAGACTCAAATGGTAGTTTTGTGAATGGAGATTTGGGGGAGATTGGTTACATAGCCCCAGAGTATCCAAGTACTTTGGTTGCTTCATTGAAAGGGGATGTGTATGGTTTTGGTGTTTTGCTTTTGGAGTTGGTGACAGGGCAAAAGCCACTTGATGTTAGCAATGGGGATGAAGAGTTCAAGGGTAGCTTGGTGGATTGGGTGAACATGCATTCTAGTTTGGGAAGGATCAAGGATTGCATTGATAAAGCCATATGTGGAAGGGGGCATGATGAGGAGATTCTTCAGTTTCTGAAAATTGCTTTGAATTGTGTGGTTTCACGCCCCAAAGATAGGTGGTCTATGTATCAGGTTTATCATTCCTTAAAGGGCTTATCCAAAGATCAGAGTTTCTTTGAACATGATGATGATTTTCCCTTGATCTTTGGTAAGCCAGAAAACGAGGCAGCGTAG 1818 0.4802 MDHSNTFSSSFLLLTLLGFHVFLASSQVEDDVKCLSGIKEAVSDPQGHLSLWRFENTTVGFICDFVGVTCWNQRENRVLSLDFQDFKLSGRIPEALQYCGKSLQRLNLASNSFSSEIPHEICKWMPFLVALDLSGNQLSGPIPPTLVNCSYLNELMLSDNQLSGSIPFELGSLSRLKKFSVANNRLSGTIPEFFHGFEREGFEGNSGLCGCPLGSKCGGMSKKNLAIIIAAGVFGAAASLLLAFGLWWWYHLGGKKKKKGYGVGSSVGAAGDWALRLRGYKLVQVSLFQKPIVKVKLGDLMAATNNFSGQNVLFATRTGTTYKADLPDGSTLAVKRLSACRIGEKQFGMEMNRLGQVRHPNLAPLLGYCVVEEEKLLVYKHMSNGTLYSLLHKNGGVLDWLMRFRIGLGAARGLAWLHHGCHPPIIQQNICSNVILVDEEFDARLMDFGLARLMASDSNGSFVNGDLGEIGYIAPEYPSTLVASLKGDVYGFGVLLLELVTGQKPLDVSNGDEEFKGSLVDWVNMHSSLGRIKDCIDKAICGRGHDEEILQFLKIALNCVVSRPKDRWSMYQVYHSLKGLSKDQSFFEHDDDFPLIFGKPENEAA 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4439g00001 605 Gene3D Transferase(Phosphotransferase) domain 1 382 598 - -
Vium4439g00001 605 SUPERFAMILY Protein kinase-like (PK-like) 284 577 IPR011009 -
Vium4439g00001 605 Pfam Leucine rich repeat N-terminal domain 29 71 IPR013210 -
Vium4439g00001 605 Pfam Protein tyrosine and serine/threonine kinase 328 520 IPR001245 GO:0004672|GO:0006468
Vium4439g00001 605 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 28 218 - -
Vium4439g00001 605 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 77 194 - -
Vium4439g00001 605 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 382 599 - -
Vium4439g00001 605 Gene3D Phosphorylase Kinase; domain 1 268 381 - -
Vium4439g00001 605 Gene3D Ribonuclease Inhibitor 28 219 IPR032675 -
Vium4439g00001 605 ProSiteProfiles Protein kinase domain profile. 307 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4439g00001 605 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 269 381 - -
Vium4439g00001 605 SUPERFAMILY L domain-like 27 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4439g00001 Vium-Chr4439 26269 28728 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4439g00001 11 603 Receptor kinase-like Gene Family AT3G28450 62.729 0.0 759
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Vium4439g00001 PK_Tyr_Ser-Thr 1.7e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4439g00001 - - gmx:100810378 999.193