Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4437g00001 ATGTTAAGTGTAGCTCCTTCTGTTGATACCAATACTACCAAAGAGATGCCTGCAACAAAAACAGAGCAGAACCAAATTCCTCAGACTACCCATGTATTCAAATCAAAATTACCAGACATACCAATCTCCAACCACATGCCCCTCCATGCTTACTGCTTCGAAAACCTCTCCAAATTCGCCGACCGTCCTTGCCTCATCGTCGGCTCCGCCGCCAAAACATACACTTACGCAGAGACTCACCTTATATCACGCAAGATTGCAGCCGGATTCTCGAACCTCGGCATCCGAAAGGGCGACGTCGTCATGATCCTCCTCCAGAACTCCGCCGAGTTCGTCCTCTCCTTCCTCGCCGCCTCCATGATCGGTGCCGTTGCCACCACCGCCAACCCGTTCTACACCGCCGCCGAGATCTTCAAGCAGTTCAGCGCCTCCAAGGCGAAGCTCATCATAACTCAGGCAATGTACGTGGACAAGCTCCGCAACCACGACGGCGGATGGAGCCTCGGCGAGGACTTCAAGGTCGTGACCGTGGACGATCCGCCGGAGAACTGCCTCCACTTCTCGGTGCTCTCGGAGGCGAACGAGAACGACGTTCCGGAGGTGGAGATCCATCCGGACGACGCGGTGGCGCTTCCGTTCTCCTCCGGCACCACGGGGTTACCGAAAGGAGTGATTCTGACTCACAAGAGTTTAACCACGAGCGTGGCGCAACAGGTGGACGGGGAGAACCCTAACCTCTACCTCACTACCGAGGACGTACTCCTCTGCGTGCTCCCGCTCTTTCACATATTCTCGCTCAACAGTGTGCTGTTATGCGCGCTGAGAGCCGGGAGTGGCGTTTTGCTGATGCAGAAGTTCGAGATTGGGACGCTGCTGGAGCTCATACAGCGCTACCGCGTGTCGGTGGCCATGGTGGTGCCTCCCTTGGTGCTGGCGCTGGCAAAGAATCCGATGGTCGCGAATTTTGACCTCAGTTCAATACGGTTAGTTCTCTCCGGTGCCGCTCCCTTGGGTAAGGAGCTCGAAGACGCCCTCCACAGCAGGGTGCCTCACGCTGTTTTGGGACAGGTAACTAATTACCGTACACATTCCCTTAATTTTATTAATTATTATAATTATTATGGACGTAAAACTCTAATTCTAACATTATAA 1152 0.5391 MLSVAPSVDTNTTKEMPATKTEQNQIPQTTHVFKSKLPDIPISNHMPLHAYCFENLSKFADRPCLIVGSAAKTYTYAETHLISRKIAAGFSNLGIRKGDVVMILLQNSAEFVLSFLAASMIGAVATTANPFYTAAEIFKQFSASKAKLIITQAMYVDKLRNHDGGWSLGEDFKVVTVDDPPENCLHFSVLSEANENDVPEVEIHPDDAVALPFSSGTTGLPKGVILTHKSLTTSVAQQVDGENPNLYLTTEDVLLCVLPLFHIFSLNSVLLCALRAGSGVLLMQKFEIGTLLELIQRYRVSVAMVVPPLVLALAKNPMVANFDLSSIRLVLSGAAPLGKELEDALHSRVPHAVLGQVTNYRTHSLNFINYYNYYGRKTLILTL 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4437g00001 383 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 29 355 - -
Vium4437g00001 383 Gene3D - 23 360 IPR042099 -
Vium4437g00001 383 MobiDBLite consensus disorder prediction 1 28 - -
Vium4437g00001 383 ProSitePatterns Putative AMP-binding domain signature. 211 222 IPR020845 -
Vium4437g00001 383 SUPERFAMILY Acetyl-CoA synthetase-like 37 353 - -
Vium4437g00001 383 Pfam AMP-binding enzyme 54 353 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4437g00001 Vium-Chr4437 29 1330 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4437g00001 27 356 Monolignol Biosynthesis Gene Families AT1G65060 67.568 2.16e-162 463
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4437g00001 K01904 - gmx:547492 594.349