Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4435g00006 ATGTCATTAGTTAGGTCTGCTGATGTTAGACCAGGCTTGTCCTCTCAAATTTTTGGTCCTGATAAGCATAGGAGCATGTACATGACAGATTCTTACTCCAGCGAGAGTTATGAGAAGTACTTCAATGACTCTCCAACAGAAGAACTGATAGAACCATCTAACTCCAGCATCTCTGAAAGTTCAATCCCCCCTGATGTGGCCTCTTCTTACCAGCTTACGGCCAGTTCAGAAGCTTCTGTGGTTGCCAATAACCCATTTGATTGTTCTTTCATGTCCACAGTGACACACGATGTTTATGAGGCAAACTATGGATCAGATTTGATGGAGAATGGAAGCCTCGATTCCCGTGAAAATGATGGTCTAATGAGTTTAAAACTACAAGCATTGGAGAGGGCATTGCTTGATGACAGTGAGGCTGAGGAGGAGGAGCTTGAAGAGGAAGACATATTTGAGGCTGTTCAAAGCATGGAAATTGATCCAGACATTGCAGAGTGGTCTGATTCCATGCAGAATATGGTCCTCCATGATTCACCAAAGGAGTACTCTTCTTCAGATTCCAGCATCAGCAGCATCGTCAGCAGCACCAAAGAAATATCACAAATTTCTCAGACCCCAAAGCAGCTGCTTTATGAATGTGCTATTGCACTTTCAGAAGGAAACGAAGAGGAAGGATCATCCATGATAAACAATCTCAGACAGATGGTGTCAATTCAAGGAGAGCCTTCTCAAAGAATTGCAGCCTATATGGTTGAGGGGCTAGCAGCTCGCCTAGCGGAATCCGGCAAAAGTATTTACAAAGCTCTGAGATGCAAGGAACCACCTTCTTCAGATCGTCTAGCAGCCATGCAGATACTGTTTGAGGTTTGCCCATGTTTCAAATTTGGATTTATTGCTGCTAACAATGCAATTACAGAAGCAGTGAAAGATGACATGAACATTCATATCATAGACTTTGACATCAACCAAGGAAGTCAGTACATTAATCTAATCCAAACACTGGCTTCAAGGTCAAGTAAGCCACCCTATGTTAGATTGACTGGGGTTGATGATCCTGAGTCTGTGCAGCGATCTGTTGGAGGCCTAAAGAACATAGGACAAAGACTAGAAAAACTGGCAGAGGCACTTGGTCTGCCATTTGAGTTCCGAGCAGTGGCATCAAGGACTTCCATTGTCACCCCATCAATGCTCAACTGTAGTCCTGGGGAAGCACTTGTGGTGAACTTTGCATTCCAGCTTCACCACATGCCTGATGAGAGTGTTTCAACAGTAAACGAACGGGACCAACTTCTTCGTTTGGTGAAGAGCTTGAATCCAAAGCTTGTGACAGTTGTGGAGCAAGATGTGAACACAAACACTACCCCCTTCTTGCCTAGATTTGTTGAAGCCTACAATTACTACTCTGCTGTGTTTGAGTCACTTGATGTTACCCTTCCAAGAGAAAGCCAGGACAGGATGAATGTTGAAAGGCAATGCTTGGCCAGAGACATTGTCAATGTTGTTGCATGTGAGGGTGAGGATAGGATAGAACGATATGAAGTGGCAGGAAAATGGAGAGCAAGGATCACAATGGCTGGCTTCACTTCATCTCCAATGAGCACAAATGTGACTGATGAAATCAGAAACCTCATTAAGGTGATGTATTGTGACAGGTACAAGATTAAGGAGGAAATGGGTGCACTTCACTTTGGTTGGGAAGACAAAAACTTGATCGTTGCTTCGGCATGGAAGTTACCAAGATAA 1740 0.4385 MSLVRSADVRPGLSSQIFGPDKHRSMYMTDSYSSESYEKYFNDSPTEELIEPSNSSISESSIPPDVASSYQLTASSEASVVANNPFDCSFMSTVTHDVYEANYGSDLMENGSLDSRENDGLMSLKLQALERALLDDSEAEEEELEEEDIFEAVQSMEIDPDIAEWSDSMQNMVLHDSPKEYSSSDSSISSIVSSTKEISQISQTPKQLLYECAIALSEGNEEEGSSMINNLRQMVSIQGEPSQRIAAYMVEGLAARLAESGKSIYKALRCKEPPSSDRLAAMQILFEVCPCFKFGFIAANNAITEAVKDDMNIHIIDFDINQGSQYINLIQTLASRSSKPPYVRLTGVDDPESVQRSVGGLKNIGQRLEKLAEALGLPFEFRAVASRTSIVTPSMLNCSPGEALVVNFAFQLHHMPDESVSTVNERDQLLRLVKSLNPKLVTVVEQDVNTNTTPFLPRFVEAYNYYSAVFESLDVTLPRESQDRMNVERQCLARDIVNVVACEGEDRIERYEVAGKWRARITMAGFTSSPMSTNVTDEIRNLIKVMYCDRYKIKEEMGALHFGWEDKNLIVASAWKLPR 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4435g00006 579 MobiDBLite consensus disorder prediction 47 65 - -
Vium4435g00006 579 Coils Coil 127 147 - -
Vium4435g00006 579 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 175 571 IPR005202 -
Vium4435g00006 579 MobiDBLite consensus disorder prediction 46 65 - -
Vium4435g00006 579 ProSiteProfiles GRAS family profile. 196 576 IPR005202 -
Vium4435g00006 579 Pfam GRAS domain family 206 576 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4435g00006 Vium-Chr4435 77903 80896 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4435g00006 1 576 GRAS Transcription Factor Family AT1G21450 59.599 0.0 671
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium4435g00006 GRAS 2.6e-135 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4435g00006 - - gmx:100788103 964.911