Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4435g00002 ATGGTGCCTCCGGGGCCACCCACTCCCATTGGTGGTGCCCAGTCTGTTTCACCCTCTCTTTTAAGATCAAATTCTGGAATGCTAGGAGCTCAAGGGGGTCCCATGCCGTCGCAGACATCTTTCCCTTCACTTGTGTCTCCGCGTACTCAGTTCAACAACATGAACATTCTAGGAAATATGTCCAATGTAACTTCCATACTGAATCAATCTTTCCCAAATGGAGCTCCAAATCCTGGGCTATCTGGTCCAGGAAGTAGCCAACGTGGAGCAATTGATACTGGAGCTGAAACAGATCCGCTCTCCACTGTTGGTAATGGAATGAGCTTCAATAATTCTTCTTCCACGTTTGTACAGTCAAATATAGTAAATGCTGCTTCCTCTGGTCAAGGTCAGGGTCAACAATTTTCAAACCCTTCTAGTAACCAGATGTTACCTGATCAACAACATTCCCAACAGCTTGAACCTCAAAATTTCCAACACAGTCAGCAGTCAATGCAACAGTTCTCTGGTCCTCTAAATACACAGCAGCTGCCTCCGCAGCAGCATTTTCAATCAATTCGAGGAGGTATAGGTGGCATGGGACCCGTAAAGCTAGAGCCCCAGGTAAACAACGATCAACTTGGACAGCAGCAGCAGCCGTTGCAATCTTTAAGGAGCCTTTCTTCAGTTAAATTGGAGCCACAACAAATGCAGACAATGAGAACATTGGGACCTGTTAAAATGGAGCCTCAGCACTCTGATCAACCATTATTTTTGCAGCAACAACAGCAACAACAACAACAACAATTCCTCCACATGTCAAGTCAATCATCCCAGGCTACTGCTGCCCAGATCAATCTTTTGCGCCAGCACAGGCTTTTACAGTTACAACAACAACACCAGCAGCAGCAACTCTTGAAGGCAATGCCTCAGCAACGCTCCCAGCTACCACAGCAATTTCAACAGCAGAACATGCTAATGAGATCTGTGAAACCAGCTTATGAACCCGGGATGTGTGCTAGGCGGCTGACACATTACATGTATCAGCAACAACATAGACCTGAAGATAACAATATTGAGTTCTGGAGAAAGTTTGTTGCTGAGTATTTTGCTCCTAATGCCAAGAAGAAATGGTGTGTTTCTATGTATGGAAGTGGAAGACAAACAACTGGAGTTTTCCCTCAGGATGTATGGCACTGTGAAATATGTAATCGCAAGCCTGGACGTGGTTTTGAAGCAACTGTTGAGGTTCTTCCCCGGCTTTTCAAGATAAAGTATGAAAGTGGAACTTTGGAAGAACTGCTTTATGTTGACATGCCTCGTGAATATCATAATTCCTCTGGTCAGATTGTACTAGATTATGCTAAAGCAATACAAGAAAGCGTTTTTGAGCAACTTCGTGTTGTTCGTGATGGTCAACTTCGAATAGTTTTCTCTCCAGACCTGAAGATTTGTTCTTGGGAATTTTGTGCTCGGCGCCATGAGGAGCTCATACCCAGGAGATTGTTAATACCACAGGTTAGCCAGCTTGGAGCAGTTGCACAAAAATACCAGGCTTTTACTCAAAATGCAACACCAAATATATCTGTTCAAGAATTACAAAACAACTGCAATATGTTTGTTGCATCAGCCCGTCAGTTGGCTAAAGCCTTAGAAGTACCATTGGTTAATGATCTAGGATACACAAAGAGATATGTGCGCTGCCTACAGATATCAGAAGTTGTAAATAGTATGAAAGACTTGATAGATTACAGCAGGGAAACTGAGACTGGACCTATGGATAGCTTGGCAAAATTCCCTCGGAGAACAAATGGTTCTTCTGGACCTCGTGGTCAAGCACAACAGCATGAAGAACAATTACAGCAGCAGCAGCAACAGCAACAAATGTTGGCCCATAATTCAAATGGTGATCAAAACTCAGTACAAGCTGCTGCCATGCAAATTGCTTCTAGCAATGGTATGGTCAGTGTGAATAACAATGTCAACTCAGCATCCACATCAACCACCACAAGTACTATCGTTGGACTTCTCCACCAGAATTCAATGAATTCTAGACAACAAAATTCAATGAACAATGCAAGTAGTCCATATGGAGGTAGTTCCGTTCAGATTCCATCCCCAGGTTCCTCCAATACAGTGCCACAGGTCCAGCCAAACTCATCCCCTTTTCAATCACCAACGCCATCTTCTAACAACCCCCCTCAAACATCTCACCCTACTTTAACATCGGGCAATCACATGAGTACAACTAACTCAGCAGCTAATATTTCCATGCAACAGCAGCAGCCATCTATTTCTGGTGATCCTGACCCTAGTGATACTCAAAGCTCAGTCCAGAAAATCATACATGAAATGATGATGTCCTCTCAGATTAACGGCACAGGAGGAATGATCGGTGTTGGTTCTCTTGGAAATGATGTGAAAAATGTAAATGGTATTCTGCCAGTGAGTGCCAATACAGGGCTCAATGGTGGCAATGGCTTGATGGGTAATGGGTCAATGAACAGTAATTCAGGTGTCGGGGTTGGTAATTACGGCACAATGGGTCTTGGTCAATCCGCTATGCCTAATGGAATGAGAGCTGCTGTGGTGAATAATTCAATCATGAATGGAAGGGGAGGAATGGCATCTCTTGCTCGGGATCAAGCTATGAATCATCAACAGGATTTGTCAAACCAGCTACTTAGTGGGCTAGGGGCAGTAAATGGTTTTAATAATCTTCAATTTGATTGGAAACCTTCTCCTTGA 2727 0.4378 MVPPGPPTPIGGAQSVSPSLLRSNSGMLGAQGGPMPSQTSFPSLVSPRTQFNNMNILGNMSNVTSILNQSFPNGAPNPGLSGPGSSQRGAIDTGAETDPLSTVGNGMSFNNSSSTFVQSNIVNAASSGQGQGQQFSNPSSNQMLPDQQHSQQLEPQNFQHSQQSMQQFSGPLNTQQLPPQQHFQSIRGGIGGMGPVKLEPQVNNDQLGQQQQPLQSLRSLSSVKLEPQQMQTMRTLGPVKMEPQHSDQPLFLQQQQQQQQQQFLHMSSQSSQATAAQINLLRQHRLLQLQQQHQQQQLLKAMPQQRSQLPQQFQQQNMLMRSVKPAYEPGMCARRLTHYMYQQQHRPEDNNIEFWRKFVAEYFAPNAKKKWCVSMYGSGRQTTGVFPQDVWHCEICNRKPGRGFEATVEVLPRLFKIKYESGTLEELLYVDMPREYHNSSGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELIPRRLLIPQVSQLGAVAQKYQAFTQNATPNISVQELQNNCNMFVASARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSRETETGPMDSLAKFPRRTNGSSGPRGQAQQHEEQLQQQQQQQQMLAHNSNGDQNSVQAAAMQIASSNGMVSVNNNVNSASTSTTTSTIVGLLHQNSMNSRQQNSMNNASSPYGGSSVQIPSPGSSNTVPQVQPNSSPFQSPTPSSNNPPQTSHPTLTSGNHMSTTNSAANISMQQQQPSISGDPDPSDTQSSVQKIIHEMMMSSQINGTGGMIGVGSLGNDVKNVNGILPVSANTGLNGGNGLMGNGSMNSNSGVGVGNYGTMGLGQSAMPNGMRAAVVNNSIMNGRGGMASLARDQAMNHQQDLSNQLLSGLGAVNGFNNLQFDWKPSP 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4435g00002 908 MobiDBLite consensus disorder prediction 68 107 - -
Vium4435g00002 908 MobiDBLite consensus disorder prediction 126 178 - -
Vium4435g00002 908 MobiDBLite consensus disorder prediction 593 633 - -
Vium4435g00002 908 MobiDBLite consensus disorder prediction 582 633 - -
Vium4435g00002 908 MobiDBLite consensus disorder prediction 677 719 - -
Vium4435g00002 908 MobiDBLite consensus disorder prediction 12 46 - -
Vium4435g00002 908 Coils Coil 606 626 - -
Vium4435g00002 908 PANTHER LIM DOMAIN-BINDING PROTEIN 36 897 IPR029005 -
Vium4435g00002 908 Pfam LIM-domain binding protein 335 589 IPR029005 -
Vium4435g00002 908 MobiDBLite consensus disorder prediction 727 770 - -
Vium4435g00002 908 MobiDBLite consensus disorder prediction 1 46 - -
Vium4435g00002 908 MobiDBLite consensus disorder prediction 677 770 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4435g00002 Vium-Chr4435 53201 63115 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4435g00002 1 904 C2H2 Transcription Factor Family AT1G43850 59.852 0.0 768
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4435g00002 - - gmx:100799771 1443.33