Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4431g00006 ATGGCCGCTGTTGGCAACCCCAGAACGTGGATTCCATATATGAACAGCAAAGACTGTTCTCAAGGGTTTTGCAGCTTGTACTGTCCACAGTGGTGTTACATAGTGTATCCACCTCCACCACCCTTTGAGTACCCTGATGATGATTCAAGCCCAAATTTCTCCCCTCTTGTCATTGCAATCATTGGTATTTTGGCCACTGCTTTTCTTCTGGTCAGTTACTACACTCTCATATCCAAGTACTGTGGCCCCAGAGAATCTTCACGGAGAGACCCAAATGACGACTTTCAAGCCACTCACAATCCCCCTCTCCACGAACCATGGAACGCTTCAACCGCTGGTCTTGACGAGGCTCTAATCAAATCAATTGCAGTTTTCAAGTACAAGAAAGGGGATGCAGGTTCTGTTGAAGTCACCAATTGTTCGGTTTGTCTCAGCGAGTTTGAAGACGACGAAAGTGTTAGACTTTTGCCAAAGTGCAGCCACGTTTTCCATGTCCCTTGCATCGACCCTTGGCTCAAGTCTCACTCCAGCTGCCCCTTGTGTCGTGCTGCCATATTCACTTTCAACGCTTCTGTTCCTCGGGCTCACACCCCAGAAGAAGAAGGCGTCCCTTCTTCAAGGAATGAAACTTCTTCTGAGAATGAAAGTGTTGGAGTGGTGGTGATGTTGGAAGAAGAAAACATACACCATTCTAGGGCTTATCCAAAGCCTGCATTGCGTGCTTTCAGTGACTTGAGTAGCTTTCAGGGCAGGCACAGAGTGGTTGAGATAAGAGATGAAGTTTGTGAATCCCTTGGTAGGTCAGTGTCCATGGACCATTCGTTTCCAAGTGGAGTTTCTGTTGCTGATGTTCTGCGAATGCATGAAGAGGAAGATTCCCAAATGGAAGGGTGTTGTTCTTCTAGTGAAGCTGGTCCATCAAAGAGATCACGCGGAGAGAGGTACAAAACAAGGGTGTTGCATTGTGTTTTGAGTCCAATTTCAATGAAGAGATCGTTTTCCAGTGACAGATTCTCAGTTGGTAAAAGTAGCAGAGCAAGACAGGGAACTATACCCATCTGA 1062 0.4661 MAAVGNPRTWIPYMNSKDCSQGFCSLYCPQWCYIVYPPPPPFEYPDDDSSPNFSPLVIAIIGILATAFLLVSYYTLISKYCGPRESSRRDPNDDFQATHNPPLHEPWNASTAGLDEALIKSIAVFKYKKGDAGSVEVTNCSVCLSEFEDDESVRLLPKCSHVFHVPCIDPWLKSHSSCPLCRAAIFTFNASVPRAHTPEEEGVPSSRNETSSENESVGVVVMLEEENIHHSRAYPKPALRAFSDLSSFQGRHRVVEIRDEVCESLGRSVSMDHSFPSGVSVADVLRMHEEEDSQMEGCCSSSEAGPSKRSRGERYKTRVLHCVLSPISMKRSFSSDRFSVGKSSRARQGTIPI 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4431g00006 353 SUPERFAMILY RING/U-box 139 188 - -
Vium4431g00006 353 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Vium4431g00006 353 Pfam Ring finger domain 139 182 IPR001841 -
Vium4431g00006 353 CDD RING-H2_EL5-like 140 182 - -
Vium4431g00006 353 MobiDBLite consensus disorder prediction 292 312 - -
Vium4431g00006 353 MobiDBLite consensus disorder prediction 84 106 - -
Vium4431g00006 353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 186 IPR013083 -
Vium4431g00006 353 FunFam E3 ubiquitin-protein ligase ATL6 104 187 - -
Vium4431g00006 353 PANTHER RING-H2 FINGER PROTEIN ATL16 41 298 IPR044600 GO:0016567|GO:0016740
Vium4431g00006 353 SMART ring_2 140 181 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4431g00006 Vium-Chr4431 103550 105177 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4431g00006 1 310 C3H Transcription Factor Family AT3G03550 42.647 4.17e-66 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4431g00006 - - vun:114176645 649.432