Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4431g00001 ATGGGTTCTGGAGGCCCTGATGACGAGGACAACCGGTGGCCGCCGTGGCTGAAGCCTCTTCTCAAAGAGAGCTTCTTTGTTCAATGCAAGCTGCACGCTGATTCGCACAAGAGCGAGTGCAACATGTACTGTTTGGATTGTATGAACGGCGCACTCTGCTCCCTCTGCCTCGCTTACCACAAAGATCACCGTGCTATTCAGATAAGAAGGTCCTCATACCATGATGTGATTAGGGTGAACGAGATTCAGAAGGTGTTGGACATTACAGGGGTTCAAACCTACATTATCAACAGCGCAAGGGTTGTTTTCTTGAATGAGAGGCCTCAGCCAAGGCCTGGTAAAGGAGTCACCAACACTTGTGAAGTCTGTGAGCGTAGCCTTCTTGATTCATACCGTTTCTGTTCTCTTGGTTGCAAGATTGTGGGGACTTCAAGGAACTTCGAGAAGAAGAAAAAGTCAGCAACAGTGGCATCAGATTCAGAGGATTCATACAGCAGCAACAGCAGCCATGGAAAGAACAACAGCAACAAGGTGCAGAGTTTCACACCGTCCACGCCACCACCGACTTCGGTTAATTACAGAACAGCCAAGAGAAGAAAGGGAATACCACACCGTGCCCCAATGGGAGGACTAGTGATAGAATACTAG 648 0.4877 MGSGGPDDEDNRWPPWLKPLLKESFFVQCKLHADSHKSECNMYCLDCMNGALCSLCLAYHKDHRAIQIRRSSYHDVIRVNEIQKVLDITGVQTYIINSARVVFLNERPQPRPGKGVTNTCEVCERSLLDSYRFCSLGCKIVGTSRNFEKKKKSATVASDSEDSYSSNSSHGKNNSNKVQSFTPSTPPPTSVNYRTAKRRKGIPHRAPMGGLVIEY 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4431g00001 215 Pfam PLATZ transcription factor 69 140 IPR006734 -
Vium4431g00001 215 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 7 208 - -
Vium4431g00001 215 MobiDBLite consensus disorder prediction 158 192 - -
Vium4431g00001 215 MobiDBLite consensus disorder prediction 151 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4431g00001 Vium-Chr4431 34223 36624 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Vium4431g00001 PLATZ 5.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4431g00001 - - pvu:PHAVU_003G2848001 421.779