Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium442g00012 ATGGCTACGAATCAGGAAGAGGTGAAGCTTTTGGGAGTCGTGGGAAGCCCTTTTGTGTGTAGGGTGCAAATTGCTCTCAAATTCAAGGGCGTTGAATACAAATTTTTGGAAGAAAATTTGGGCAACAAGAGTGAATTGCTTCTGAAATACAACCCAGTTCACAAGAAGGTTCCAGTCCTTGTTCACGGTGAGAAACCCCTTGCAGAGTCTCTTGTGATTGTTGAGTACATCGACGAGACATGGAACAACAACCCCATATTGCCTTCCGATCCTTACCAGAGAGCCTTGGCTCGTTTCTGGTCCAAATTCATTGATGACAAGGTTGTTGGTGCTGCGTGGAAATCTGTTTTCAGTGTTGATAAGGACGAGAGAGAGAAGAATGTGCAAGAGGCATTGGAGGGTCTGAAATTTCTTGAGGATGAGATAAAGGGGAAGAAGTTTTTTGGAGGAGAGGAGATTGGGTTGGTGGATATTAGTGGTGTGTTCATAGCGTTTTGGATTCCAATTATTCAGGAAATAGCAGGGTTGCAGTTATTCACCAGTGAGAAATTTCCTAATCTCTACAAATGGGGCCAAGATTTGATGAATCACTCTGTTGTGAAGGAAGTCCTTCCTCCAAGAGAACCACTGTTTTCCTTCTTCAAAGCCCGCTACGAAAACCTCACTGCCTCAGCATAG 678 0.441 MATNQEEVKLLGVVGSPFVCRVQIALKFKGVEYKFLEENLGNKSELLLKYNPVHKKVPVLVHGEKPLAESLVIVEYIDETWNNNPILPSDPYQRALARFWSKFIDDKVVGAAWKSVFSVDKDEREKNVQEALEGLKFLEDEIKGKKFFGGEEIGLVDISGVFIAFWIPIIQEIAGLQLFTSEKFPNLYKWGQDLMNHSVVKEVLPPREPLFSFFKARYENLTASA 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium442g00012 225 Gene3D Glutaredoxin 1 89 - -
Vium442g00012 225 Coils Coil 121 141 - -
Vium442g00012 225 CDD GST_C_Tau 91 217 IPR045074 GO:0004364|GO:0006749
Vium442g00012 225 CDD GST_N_Tau 8 81 - -
Vium442g00012 225 Pfam Glutathione S-transferase, N-terminal domain 7 79 IPR004045 -
Vium442g00012 225 Pfam Glutathione S-transferase, C-terminal domain 115 196 IPR004046 -
Vium442g00012 225 SFLD Main.3: Omega- and Tau-like 4 223 IPR045073 -
Vium442g00012 225 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 90 213 IPR010987 -
Vium442g00012 225 Gene3D - 90 225 - -
Vium442g00012 225 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 10 208 IPR045073 -
Vium442g00012 225 FunFam Tau class glutathione S-transferase 87 224 - -
Vium442g00012 225 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 6 85 IPR004045 -
Vium442g00012 225 SUPERFAMILY Thioredoxin-like 8 108 IPR036249 -
Vium442g00012 225 FunFam Glutathione S-transferase GSTU6 3 87 - -
Vium442g00012 225 SFLD Main (cytGST) 4 223 - -
Vium442g00012 225 SUPERFAMILY GST C-terminal domain-like 79 220 IPR036282 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium442g00012 Vium-Chr442 210663 211808 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium442g00012 4 224 Glutathione S-transferase Gene Family AT3G09270 53.125 2.57e-81 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium442g00012 K00799 - gmx:100807613 377.096