Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium442g00002 ATGGCTGAGGGTTTTGAGCACTACCATGTCCCACAACAAAGTAGGAGGGACAAGCTAAGAGTTTTCCCTCAGAACCACCCTTCTTTCCTTGAATCTTCCTCTATCCTTCACCCCACTTCTCCAAATTTAACCTCTCTCTACGATCCTTCTCTTCTTCCCTCTGATTTCTTGGCTTGTGCCACCCAACAACCTCCCGCTGCTAAGGGAGAAGGTTCCAATTTGATGATGGGGTTTGTCGAAGGAGGGGTTGTCAATGGTGATGCAATTCATGTTATCAACAGTAATACCAACCACCACCACAACAACCCTTTTCTCTATCAGCTTCAGAACCTTAGGGAATTTGGTGATGGCTACAATGATGCGAGTGAAATGATGGTGTTCAAGCCCGAGCCTTTGTCTTTGTCTTTGTCTTCCCAGAGTAACAACACTCATCACCCTTTGGAACTGAATCTTCAGCGATTTGGGGCTGTTATTCCTGGTTTGGTTGGAAGGAACAGTGAGGTTTCGAGGAATTCGGTTCCACTTGGACCCTTTACGGGGTATGCTTCGATATTGAAGGAATCGCGGTTCTTGAAACCTGCACAGCAATTATTGGAAGAGTTATGTGATGGTGGGGTTCGTGAAATTTACGCTACCGAGAAGTCTCTCGCTCCTGATGCATCGTTGATGGAACCTCCTCATGAGGGTTTGAGTGCCAGTGGAGTTGTTGGTGGGGATGATCCACTAGGGGACTATGAAAATGAGAGTAGGAAGAAGAAGTGTAGATTATTAACCATGCTTGACGAGGTTTACAGGAGGTACAGGCAGTATTATCAACAGATGCATGCAGTGATAACATCATTCGAGTATGTTTCTGGTCTTGGTAATGCAGCCCCATATGCAAGTTTGGCTATAAATGCCATGTCCAAACATTTTAAATGCTTGAAGAATGCTATCACTGACCAGCTTCAGTTCATCAACAAGGCTCCTTTTCAGATTAGTAACAGAAAGGATGAATCTCCAAGGCTGCACAACAGTGATAGGGGCACTTACTGCCAAAGGCCAGGGTTTCTTGAGCACCAGCAGCCTGTTTGGCGACCTCAAAGAGGCCTTCCTGAGCGTGCTGTCAGTGTTCTCAGGGCCTGGTTGTTTGAACACTTTCTTCACCCTTACCCTACTGATACCGACAAGCTTATGTTGGCTAAACAAACTGGTCTATCTCGCAACCAGGTGTCTAATTGGTTTATTAATGCAAGAGTAAGGCTTTGGAAGCCAATGGTGGAAGAAATACACATGCTAGAATCACAGCAAGCTCAGAAAAGGCCACAGAGGGAAGAACAAAGTAGGAGAAACTTAAGTGGTGGTGATCATTTACCTTCAGACAACTCTCTTGTTACTGAGAATATTCCATCTACCTCCATGGAGAAGTTTCAGGATGCCCCTTATAAACAACACAGAAATGAAATTGCTAATATGCAAGTGAGGGGTCAAGAACAGCTGAATCAAACGAACACAAGCAATCAGCAAATGGGTGTTGGAGTGAGCATTAATAATGGTGTGTCTCTCACACTTGGTCTTCATCAAAATCATGGTATTGGTTTGTCTGAGCCCTTTGGCATGAGTGCAGCTCAACGTTTTGGTGTTGCCCTTCAGCCTGAGGGCTATGTTATAAGTGGTTTTGAATCACAAAATCGACATTTTGGAAGAGATGTTATTGGAGGAGGGCAACTGTTGCATGATTTTGTAGGCTGA 1731 0.4471 MAEGFEHYHVPQQSRRDKLRVFPQNHPSFLESSSILHPTSPNLTSLYDPSLLPSDFLACATQQPPAAKGEGSNLMMGFVEGGVVNGDAIHVINSNTNHHHNNPFLYQLQNLREFGDGYNDASEMMVFKPEPLSLSLSSQSNNTHHPLELNLQRFGAVIPGLVGRNSEVSRNSVPLGPFTGYASILKESRFLKPAQQLLEELCDGGVREIYATEKSLAPDASLMEPPHEGLSASGVVGGDDPLGDYENESRKKKCRLLTMLDEVYRRYRQYYQQMHAVITSFEYVSGLGNAAPYASLAINAMSKHFKCLKNAITDQLQFINKAPFQISNRKDESPRLHNSDRGTYCQRPGFLEHQQPVWRPQRGLPERAVSVLRAWLFEHFLHPYPTDTDKLMLAKQTGLSRNQVSNWFINARVRLWKPMVEEIHMLESQQAQKRPQREEQSRRNLSGGDHLPSDNSLVTENIPSTSMEKFQDAPYKQHRNEIANMQVRGQEQLNQTNTSNQQMGVGVSINNGVSLTLGLHQNHGIGLSEPFGMSAAQRFGVALQPEGYVISGFESQNRHFGRDVIGGGQLLHDFVG 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium442g00002 576 CDD homeodomain 358 419 IPR001356 GO:0003677
Vium442g00002 576 SUPERFAMILY Homeodomain-like 360 425 IPR009057 -
Vium442g00002 576 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 95 439 - -
Vium442g00002 576 MobiDBLite consensus disorder prediction 427 463 - -
Vium442g00002 576 MobiDBLite consensus disorder prediction 427 445 - -
Vium442g00002 576 Gene3D - 361 423 - -
Vium442g00002 576 SMART prehox3 179 314 IPR006563 -
Vium442g00002 576 Pfam Associated with HOX 184 313 IPR006563 -
Vium442g00002 576 Pfam Homeobox KN domain 375 414 IPR008422 GO:0003677|GO:0006355
Vium442g00002 576 MobiDBLite consensus disorder prediction 220 239 - -
Vium442g00002 576 MobiDBLite consensus disorder prediction 446 463 - -
Vium442g00002 576 FunFam BEL1-like homeodomain protein 9 361 423 - -
Vium442g00002 576 ProSiteProfiles 'Homeobox' domain profile. 355 418 IPR001356 GO:0003677
Vium442g00002 576 SMART HOX_1 358 422 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium442g00002 Vium-Chr442 86943 92718 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium442g00002 1 576 Homeobox Transcription Factor Family AT5G02030 45.016 3.36e-124 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vium442g00002 POX 1.8e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium442g00002 - - gmx:100790713 902.508