Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4427g00006 ATGTGTTGTATTGCGTTGTGTGTAGTGCCGTCTCAGGCTAATATGTTTTGGATCGGAGAGAAAGAGTCAGTGCGTTGTGCGCGTGTGCTTCAGAACATTATGGAAGGTGGCCGGAAGCCGTTGAAGCCGCGCCTTGAGCGCCGGAACGCCATGAAGAACATCGATTACCGGTTAAAGGAGGATGAAGACACAGACACCGAAACGGACATAGACATAGGTAGTTTGGATGAAAGGAGTTTCCGAGTGGAAGGAATTGACGGCGAATTCGACCGTATATTTCGGAGCTTGGGCCTGTCCGGGCCCGAGGACTTTGCCATCCCGGCGGCGGCTTGGAAAGAAGCCCAGGCCCAGAAGGCCCGCAGCACAGTGAACCTTCAACACGAACCGCCACAAAATAAAAAGCAGAGAGAGGGGGGAATAAAGGGCGTTAGGCCTCCCATTTTGGAACCGACGCAGGTTACCTCCACTTGGACCTCCCAACAACCAACGGTTTCTGATTCCGTGTCACGTGATGAAGACAGTGATGTTGGTGTTAAAGCTGAAATTGAAAAGGTTTCTGCTTTGGTCGGGAATGAGACCTTTGATATTCAAAACCTGTCGCCGAATGCAACCGGATATTTCGGGTCGTGGCAAAAAGGCGAGATCTTGGGAAAGGGCTCTTTTGGAACTGTATATGAAGGCTTCACGGACGATGGGAACTTTTTTGCCGTAAAGGAGGTGTCTTTATTGGATAACGACAGCCAGGGCAAACAGAGCATTTTCCAGCTTCAGCAGGAAATATCTCTTTTGAGTCAGTTCCGACACGACAACATAGTTCGATATCTTGGCACTGACAAGGACAATGACAAGCTGTATATCTTCCTCGAACTTGTAACAAAAGGATCGTTGGCAAGTCTCTATCAAAAGTATCGATTAGGGGACTCTCAAGTTTCTGCATACACAAGACAGATTTTGAGTGGCTTGAAGTATCTTCATGATCGCAATGTGGTTCACAGGGACATCAAGTGTGCCAATATATTGGTTGATGCAAATGGGTCCGTCAAGCTTGCAGATTTTGGATTGGCGAAGGCAACCAAGCTGAATGATGTTAAATCAAGTAAAGGCTCTCCGTACTGGATGGCCCCTGAGGTTGTTAACTTGAGGAACCGTGGATATGGGTTAGCAGCTGATATATGGAGCTTAGGATGTACAGTATTAGAGATGTTGACACGCCAACCTCCTTATTCTCATTTGGAAGGAATGCAAGCGATATTTCGAATTGGCAGTGGTCAACCCCCACCTGTTCCGACATCTTTGTCAACAGATGCACGAGATTTTATTCTTAAATGCTTACAAGTTAACCCAAACAAACGGCCAACTGCTGCTGGGCTATTAGACCATCCATTTGTAAAGAGACCACTTCTGTCTCCCATAAGTCCTGTTTCTCCAAGTATCAACCTTTTACTGTCCTAA 1452 0.4697 MCCIALCVVPSQANMFWIGEKESVRCARVLQNIMEGGRKPLKPRLERRNAMKNIDYRLKEDEDTDTETDIDIGSLDERSFRVEGIDGEFDRIFRSLGLSGPEDFAIPAAAWKEAQAQKARSTVNLQHEPPQNKKQREGGIKGVRPPILEPTQVTSTWTSQQPTVSDSVSRDEDSDVGVKAEIEKVSALVGNETFDIQNLSPNATGYFGSWQKGEILGKGSFGTVYEGFTDDGNFFAVKEVSLLDNDSQGKQSIFQLQQEISLLSQFRHDNIVRYLGTDKDNDKLYIFLELVTKGSLASLYQKYRLGDSQVSAYTRQILSGLKYLHDRNVVHRDIKCANILVDANGSVKLADFGLAKATKLNDVKSSKGSPYWMAPEVVNLRNRGYGLAADIWSLGCTVLEMLTRQPPYSHLEGMQAIFRIGSGQPPPVPTSLSTDARDFILKCLQVNPNKRPTAAGLLDHPFVKRPLLSPISPVSPSINLLLS 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4427g00006 483 FunFam Mitogen-activated protein kinase 1, putative, expressed 208 476 - -
Vium4427g00006 483 Pfam Protein kinase domain 211 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4427g00006 483 ProSitePatterns Serine/Threonine protein kinases active-site signature. 329 341 IPR008271 GO:0004672|GO:0006468
Vium4427g00006 483 SUPERFAMILY Protein kinase-like (PK-like) 207 473 IPR011009 -
Vium4427g00006 483 ProSiteProfiles Protein kinase domain profile. 210 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4427g00006 483 SMART serkin_6 210 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4427g00006 483 MobiDBLite consensus disorder prediction 121 176 - -
Vium4427g00006 483 MobiDBLite consensus disorder prediction 149 167 - -
Vium4427g00006 483 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 120 467 - -
Vium4427g00006 483 Gene3D Transferase(Phosphotransferase) domain 1 208 474 - -
Vium4427g00006 483 ProSitePatterns Protein kinases ATP-binding region signature. 216 238 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4427g00006 Vium-Chr4427 46603 50116 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4427g00006 190 467 MAP Kinase Kinase Kinase AT4G08500 66.667 1.16e-128 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vium4427g00006 Pkinase 5.1e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4427g00006 - K13414 var:108347588 909.057