Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4423g00003 ATGGATATCGCCTCCTCATCATACAAACTACCACGGAAGTACGATGTGCTCATCAACTTCACTGGAGAAGACATCAACAGAAAATTTGTTTCTCATCTCAATTCTGTCCTCTCTACTGTTGGTCTTACCACTTTCCTTCATCACCACAATGCAGTGAAGTCAACTCACATCCAAGAACCTATTCTCAGCCACTGTCGGGTAGCAATTATTGTTTTCACCCAAACGTATTCTCAATCTGCTTGGTGTCTTAATCAGCTTGAACAAATCATCAAATGGCACGAAACTTATTTCCGACATGTTATGCCAGTATATTATGAAATCCAGCCATCTGATGTACGTCTTCAGAAGGGTGACTTTGGAAAAGTCTTGAAGGCAACTGCACAGCAAACATTTTCAGGAGAAGAACTGGAGCATGGAATGTCCAGGTGGAGCCATGCACTCACCAAAGCTGCAAATTTCTTTGGATGGGATGAGAGCAATCACAGGAGTGATGCTGAACTAGTGGACAAAATTGTTAAGAGCGTTTTTAATTTACAAGTCTTGTCTGCTACTAAATTTCCTGTTGGATTACAATCCCACGTGGAAGATTTGATTCGAACTATCAAAAATAAATCCACTGAAGTTTGTATGATAGAGATATGTGGAGAGGAAGGATCTGGTAAAACCACTCTTGCCAAAGCCATCTACAATCAAATTCAATGGACATTCAAAGACAAAAGTTTCATTGAAAATATTTCACAATTTAGAGGAATAAGAGGGCTTCTTCGTTTACAAGAACAACTTCTTTTAGATATCCTAAAACAAAAAGTGGAGATTCCTAGCGTTGATGTGGGAAGAACTATGATTCGGGAAAGACTATTAGGAAAAAGGGTTCTGATTGTACTTGACGATGTTAATTACTTTAATTTATTCGACCTATTTGATTGTCTTAAATTGTTAGTTGAAGGAAGTGTTATAATCGTTACATCAATATATGGAATAGGGCTGGGAGATCAAGCTAATTTTGACTTTCAGGTAGAGCGAATGAACGCAGAGGAGTCCCTTGAGCTTCTTAGTTGGCACGCATTTAGAGAAGCAAAACCAAAAGAAGAATACAAAGACCTTGCAAGAAGAGTAGTTAGTTATTGTAGAGGACTACCACTAGCTCTTGAAGTCGTTGGAAGTAGTTTATTTGAAAAGAAGAAAGAAGAATGGGACACTGTATTGTTAAAATTTGCGATAGTTAGCAGGCATCATGTTTCAGAGATAATAAAAATAAGCATCGAAGGATCACTCAATGAAATAGAAAAAGATATATTCCTTGATATATGTTGTTTTTTTGTTGGTAAGAGCAGAGCCTATGTTACGAAGATCCTAAATGGCTGTGGAGTAGACGCTGATATTGGAATAAGAGTTCTCATGGAGCGTAACCTCATCAAAATTAACAAGAACAACAAATTTGGAATGCATCCTTTGCTACAAGAAATCGGAATAAGAATTACTCAGGAAAATTTAGGAAAGGAACATTGGAAGAACAGGCGACTGTGGTTTGGTATGGATGCAAGATATGTAAGAACATTCTTTACATGTGGTTTGAAACTTCTTTTGAAAGTGTTTTCTTTCTCCTGTGCAGTACATTTGTTTTTATTTGCTCTTTTCAACACAGGGGACAGAAGTCATGCAGTGGTTGCCTGGGAAACAGCCTTCAGTTCTCACTGCCATCGGAAGTGTACAACCCACGGTAAATTTTCAGTACCTTCTAAAACTATCTTGGTGCAGGTTTTGATATCGCTAAAAGTCCTTAACCTCAGTCATTCCAAGCATTTAACTACAACCCCTGACTTTACCGGATTACCAAGTCTTGAACACCTCATTTTCAAATATTGTTCAAGATTGAGCAGAGTACACCAATCTATTGGATCACTCAACAGTCTTATACTGCTAAATTTGAAAGACTGTACAAGTCTAAACAATCTTCCAACAGAGATATATGAGTTGAAATCTTTAAGAACCTTCATTCTCTCTGGTTGTTCCAAGATTGACATAATGGATAAAGATATAGCAAAGTTGAAATCCTTGATAACTCTAATTGCTGAAAATACAGCTGTGAAAGAAGTGCCTTTTTCAATTGTAAGCTCAAAAAGCATTGGATATATATCCCTACGTCAATTTGAGGGATTATCTCATAATCTTTTTCCTTCTATCATTCGGTCTTGGATGTCCCCAATAATGAATCCCATCTCTTATATTCATTCGTTTTGCATGGATATGGAGGATAATACGATTGATATTGCACCATTGCTTAGCACCCTTACAAATATTCAAAGTGTTTTGGTAGCATGTGACACCGAATTTGAATTATCTAAGCGAGTGAAAAATATTTTGGTTGAATATTTCGCGAATATTATAGAATCAGGAATTTCAAAGCAGCACTTCAGGTGTTCTTTGATTGGTGTTGGAGCATACCATCAATTCTTCAATGCAGTCAGCGATAACATATCTCAGGTTCTTCTCTATGATTCTTGTGATGTTTGTCTCCCAGCTGTGAATGATCCTTATTGTTTGGCCCATATGGGTGAGGGACACTCTGTTTCTTTCGTTGTGCCTGAAGATGGTGATATGAAAGGAATGATTTTGTGTGTTGTTTATTTATCAACTCCTAAGATCATTGAACCTGAATTTACTACTGTCGTAATTGTTAATTACACAAAGTGTACATTCCATATACACAATCATGGCACAGTAATTTCCTTTAATGACGAAGATTGGCATGGCATAATGTCAAATTTAGAATCTGGAGACAATGTGGAGATTTTTGTGAACTTCGGTAATGGATTGGTGGTAAAGAACACAACGGTGTCTCCCGCCCCCTGGATCAAAAGGGAAATCANAGTAGTTAGTTATTGTGGAGGACTACCACTAGCTCTGGAAGTCGTTGGAAGTAGTTTATTTGAAAAGACGAAAAAAGAATGGGACACTATATTGTCAAAATTTGCGATAGTTGGGAGGCATCGTGTTTCAGAGATAATAAAAATAAGCATTGAAGGTTCACTGAATGAAATGGAGAAAGATATATTCCTTGATATATGTTGTTTCTTTGTTGGTAAGAGCAGAGCCTACGTTAGGAAGATCCTAAACGGTTGTGGAGTAGACGCTGATATTGGAATAAGAGTTCTTATCGAGCGTAACCTCATCACAATTAACAAGAACAACAAATTTGGAATGCATCCTTTGCTACAAAAAATCGGAATACAAATTATTCAAGAAAATTTTGTAAAGGATCTTGGGAAGAACAGGCGACTGTGGTTTGATAAGGATACAAAATATGGGACAGAAGACATGCAGTGGATGCCTGTGAAACTGCCTTCAGTTCTCATTGCCTTAAAAACTGTACACTCGACTGTAAATTCTCAATACCTTATTAAGAAACTAAGATGGATCAGTTTGCGTGCGTTTTCTTCAGAATGTCTACCTAACAACCTTTATGAGCCTGATGCAATAGCTATTGATTTAAAACGCAGTCTTCTTCGATTTCTCTGGAAAACACCCCAGGTTTTGAGATCGGTGAAAGTCCTTAACCTCAGTCACTCCAAGCATTTAACTGCAACCCCTGACTTTACCGGATTACCAAGTCTTGAACACCTCATTTTCAAATATTGTTCAAGATTGAGCAAAGTACACCGATCTATTGGATCACTCAACCGTCTTATACTGTTAAATTTGAAAGACTGTACAAGTCTAAACAATCTTCCAACAGAGATATATGACATGAAATCTTTAAGAACTCTCATTCTTTCTGGTTGTTCGAAGATTGACATAAAGGATAAAGATATAACAAAGTTGGAATCCTTGATAACTCTAATTGCTGAAAATACAGCTGTGAAAGAAGTGCCTTTTTCAATTGTAACTTCAAAAAGCATTGGATATATATCCCTACGTGGATTTGAGGGATTATCTCATAATCTTTTTCCTTCTATCATTCGGTCTTGGATGTCCCCAATAATGAATCCCATCTCTTATATTCATTCGTTTTGCATGGATATGGAGGATGATACGATTGATATTGCACCTATGCTTAGCACCCTTGCAAATATTCGAAGTGTTTTGGTAGCATGTGACACCGAATTTCAGTTATCTAATCAAGTGAAAAATATTTTGGTTGAATATTTTGCGAATATTACAGAATCAGGAATTTTAAAGCAGCACTGCAGGTGTTCTTTGATTGGTGTTGGAGCATACCATCAATTCTTCAATGCTGTCAGCGAAAACATATATGAGGTATTGTCAAGCAGTGAGTGTGGTGATGTTTGTCTCCCAGCTGTGAATGATCCTTATTGTTTGGCCCATATGGGTGAGGGACACTCTGTTTCTTTCGTTGTGCCTGAAGATGGTGATATGAAAGGAATGATTTTGTGTGTTGTTTATTTATCAACTCCTAAGATCATTGAACCTGAATTTACTACTGTCGTAATTGTTAATTACACAAAGTGTACATTCCATATACACAATCATGGCACAGTAATTTCCTTTAATGACGAAGATTGGCATGGCATAATGTCAAATTTAGAATCTGGAGACAATGTGGAGATTTTTGTGAACTTCGGTAATGGATTGGTGGTAAAGAACACAACGGTGTATCTCATATGTGGTGAATCAAAGAACATGGAAAAGCGTCTGAGCCAAAGAAACATTCTCTCATTAGATTCATAA 4689 0.3709 MDIASSSYKLPRKYDVLINFTGEDINRKFVSHLNSVLSTVGLTTFLHHHNAVKSTHIQEPILSHCRVAIIVFTQTYSQSAWCLNQLEQIIKWHETYFRHVMPVYYEIQPSDVRLQKGDFGKVLKATAQQTFSGEELEHGMSRWSHALTKAANFFGWDESNHRSDAELVDKIVKSVFNLQVLSATKFPVGLQSHVEDLIRTIKNKSTEVCMIEICGEEGSGKTTLAKAIYNQIQWTFKDKSFIENISQFRGIRGLLRLQEQLLLDILKQKVEIPSVDVGRTMIRERLLGKRVLIVLDDVNYFNLFDLFDCLKLLVEGSVIIVTSIYGIGLGDQANFDFQVERMNAEESLELLSWHAFREAKPKEEYKDLARRVVSYCRGLPLALEVVGSSLFEKKKEEWDTVLLKFAIVSRHHVSEIIKISIEGSLNEIEKDIFLDICCFFVGKSRAYVTKILNGCGVDADIGIRVLMERNLIKINKNNKFGMHPLLQEIGIRITQENLGKEHWKNRRLWFGMDARYVRTFFTCGLKLLLKVFSFSCAVHLFLFALFNTGDRSHAVVAWETAFSSHCHRKCTTHGKFSVPSKTILVQVLISLKVLNLSHSKHLTTTPDFTGLPSLEHLIFKYCSRLSRVHQSIGSLNSLILLNLKDCTSLNNLPTEIYELKSLRTFILSGCSKIDIMDKDIAKLKSLITLIAENTAVKEVPFSIVSSKSIGYISLRQFEGLSHNLFPSIIRSWMSPIMNPISYIHSFCMDMEDNTIDIAPLLSTLTNIQSVLVACDTEFELSKRVKNILVEYFANIIESGISKQHFRCSLIGVGAYHQFFNAVSDNISQVLLYDSCDVCLPAVNDPYCLAHMGEGHSVSFVVPEDGDMKGMILCVVYLSTPKIIEPEFTTVVIVNYTKCTFHIHNHGTVISFNDEDWHGIMSNLESGDNVEIFVNFGNGLVVKNTTVSPAPWIKREIXVVSYCGGLPLALEVVGSSLFEKTKKEWDTILSKFAIVGRHRVSEIIKISIEGSLNEMEKDIFLDICCFFVGKSRAYVRKILNGCGVDADIGIRVLIERNLITINKNNKFGMHPLLQKIGIQIIQENFVKDLGKNRRLWFDKDTKYGTEDMQWMPVKLPSVLIALKTVHSTVNSQYLIKKLRWISLRAFSSECLPNNLYEPDAIAIDLKRSLLRFLWKTPQVLRSVKVLNLSHSKHLTATPDFTGLPSLEHLIFKYCSRLSKVHRSIGSLNRLILLNLKDCTSLNNLPTEIYDMKSLRTLILSGCSKIDIKDKDITKLESLITLIAENTAVKEVPFSIVTSKSIGYISLRGFEGLSHNLFPSIIRSWMSPIMNPISYIHSFCMDMEDDTIDIAPMLSTLANIRSVLVACDTEFQLSNQVKNILVEYFANITESGILKQHCRCSLIGVGAYHQFFNAVSENIYEVLSSSECGDVCLPAVNDPYCLAHMGEGHSVSFVVPEDGDMKGMILCVVYLSTPKIIEPEFTTVVIVNYTKCTFHIHNHGTVISFNDEDWHGIMSNLESGDNVEIFVNFGNGLVVKNTTVYLICGESKNMEKRLSQRNILSLDS 1562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4423g00003 1562 Pfam NB-ARC domain 191 406 IPR002182 GO:0043531
Vium4423g00003 1562 Gene3D - 341 423 IPR042197 -
Vium4423g00003 1562 Gene3D - 941 1009 IPR042197 -
Vium4423g00003 1562 SUPERFAMILY L domain-like 585 719 - -
Vium4423g00003 1562 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 436 IPR027417 -
Vium4423g00003 1562 Gene3D Ribonuclease Inhibitor 575 779 IPR032675 -
Vium4423g00003 1562 SUPERFAMILY L domain-like 1124 1318 - -
Vium4423g00003 1562 Gene3D Ribonuclease Inhibitor 1063 1358 IPR032675 -
Vium4423g00003 1562 PRINTS Disease resistance protein signature 210 225 - -
Vium4423g00003 1562 PRINTS Disease resistance protein signature 376 390 - -
Vium4423g00003 1562 PRINTS Disease resistance protein signature 586 602 - -
Vium4423g00003 1562 PRINTS Disease resistance protein signature 285 299 - -
Vium4423g00003 1562 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 689 IPR044974 GO:0006952
Vium4423g00003 1562 SUPERFAMILY "Winged helix" DNA-binding domain 998 1099 IPR036390 -
Vium4423g00003 1562 ProSiteProfiles TIR domain profile. 12 179 IPR000157 GO:0007165
Vium4423g00003 1562 SMART till_3 13 153 IPR000157 GO:0007165
Vium4423g00003 1562 Gene3D - 11 184 IPR035897 -
Vium4423g00003 1562 SUPERFAMILY "Winged helix" DNA-binding domain 413 498 IPR036390 -
Vium4423g00003 1562 Pfam TIR domain 13 177 IPR000157 GO:0007165
Vium4423g00003 1562 Gene3D - 190 325 IPR027417 -
Vium4423g00003 1562 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 156 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4423g00003 Vium-Chr4423 12475 19845 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4423g00003 12 703 WRKY Transcription Factor Family AT4G12020 26.781 4.71e-52 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4423g00003 - - vum:124837950 3085.43