Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4423g00001 ATGGATATCGCCTCCTCATCATACAAACTACCACGGAAGTACGATGTGCTCATCAACTTCACTGGAGAAGACATCAACAGAAAATTTGTTTCTCATCTCAATTCTGTCCTCTCTACTGTTGGTCTTACCACTTTCCTTCATCACCACAATGCAGTGAAGTCAACTCACATCCAAGAACCTATTCTCAGCCACTGTCGGGTAGCAATTATTGTTTTCACCCAAACGTATTCTCAATCTGCTTGGTGTCTTAATCAGCTTGAACAAATCATCAAATGGCACGAAACTTATTTCCGACATGTTATGCCAGTATATTATGAAATCCAGCCATCTGATGTACGTCTTCAGAAGGGTGACTTTGGAAAAGTCTTGAAGGCAACTGCACAGCAAACATTTTCAGGAGAAGAACTGGAGCATGGAATGTCCAGGTGGAGCCATGCACTCACCAAAGCTGCAAATTTCTTTGGATGGGATGAGAGCAATCACAGGAGTGATGCTGAACTAGTGGACAAAATTGTTAAGAGCGTTTTTAATTTACAAGTCTTGTCTGCTACTAAATTTCCTGTTGGATTACAATCCCACGTGGAAGATTTGATTCGAACTATCAAAAATAAATCCACTGAAGTTTGTATGATAGAGATATGTGGAGAGGAAGGATCTGGTAAAACCACTCTTGCCAAAGCCATCTACAATCAAATTCAATGGACATTCAAAGACAAAAGTTTCATTGAAAATATTTCACAATTTAGAGGAATAAGAGGGCTTCTTCGTTTACAAGAACAACTTCTTTTAGATATCCTAAAACAAAAAGTGGAGATTCCTAGCGTTGATGTGGGAAGAACTATGATTCGGGAAAGACTATTAGGAAAAAGGGTTCTGATTGTACTTGACGATGTTAATTACTTTAATTTATTCGACCTATTTGATTGTCTTAAATTGTTAGTTGAAGGAAGTGTTATAATCGTTACATCAATATATGGAATAGGGCTGGGAGATCAAGCTAATTTTGACTTTCAGGTAGAGCGAATGAACGCAGAGGAGTCCCTTGAGCTTCTTAGTTGGCACGCATTTAGAGAAGCAAAACCAAAAGAAGAATACAAAGACCTTGCAAGAAGAGTAGTTAGTTATTGTAGAGGACTACCACTAGCTCTTGAAGTCGTTGGAAGTAGTTTATTTGAAAAGAAGAAAGAAGAATGGGACACTGTATTGTTAAAATTTGCGATAGTTAGCAGGCATCATGTTTCAGAGATAATAAAAATAAGCATCGAAGGATCACTCAATGAAATAGAAAAAGATATATTCCTTGATATATGTTGTTTTTTTGTTGGTAAGAGCAGAGCCTATGTTACGAAGATCCTAAATGGCTGTGGAGTAGACGCTGATATTGGAATAAGAGTTCTCATGGAGCGTAACCTCATCAAAATTAACAAGAACAACAAATTTGGAATGCATCCTTTGCTACAAGAAATCGGAATAAGAATTACTCAGGAAAATTTAGGAAAGGAACATTGGAAGAACAGGCGACTGTGGTTTGGTATGGATGCAAGATATGTAAGAACATTCTTTACATGTGGTTTGAAACTTCTTTTGAAAGTGTTTTCTTTCTCCTGTGCAGTACATTTGTTTTTATTTGCTCTTTTCAACACAGGGGACAGAAGTCATGCAGTGGTTGCCTGGGAAACAGCCTTCAGTTCTCACTGCCATCGGAAGTGTACAACCCACGGTAAATTTTCAGTACCTTCTTAA 1743 0.3792 MDIASSSYKLPRKYDVLINFTGEDINRKFVSHLNSVLSTVGLTTFLHHHNAVKSTHIQEPILSHCRVAIIVFTQTYSQSAWCLNQLEQIIKWHETYFRHVMPVYYEIQPSDVRLQKGDFGKVLKATAQQTFSGEELEHGMSRWSHALTKAANFFGWDESNHRSDAELVDKIVKSVFNLQVLSATKFPVGLQSHVEDLIRTIKNKSTEVCMIEICGEEGSGKTTLAKAIYNQIQWTFKDKSFIENISQFRGIRGLLRLQEQLLLDILKQKVEIPSVDVGRTMIRERLLGKRVLIVLDDVNYFNLFDLFDCLKLLVEGSVIIVTSIYGIGLGDQANFDFQVERMNAEESLELLSWHAFREAKPKEEYKDLARRVVSYCRGLPLALEVVGSSLFEKKKEEWDTVLLKFAIVSRHHVSEIIKISIEGSLNEIEKDIFLDICCFFVGKSRAYVTKILNGCGVDADIGIRVLMERNLIKINKNNKFGMHPLLQEIGIRITQENLGKEHWKNRRLWFGMDARYVRTFFTCGLKLLLKVFSFSCAVHLFLFALFNTGDRSHAVVAWETAFSSHCHRKCTTHGKFSVPS 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4423g00001 580 PRINTS Disease resistance protein signature 210 225 - -
Vium4423g00001 580 PRINTS Disease resistance protein signature 376 390 - -
Vium4423g00001 580 PRINTS Disease resistance protein signature 285 299 - -
Vium4423g00001 580 Gene3D - 176 325 IPR027417 -
Vium4423g00001 580 Gene3D - 8 175 IPR035897 -
Vium4423g00001 580 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 515 IPR044974 GO:0006952
Vium4423g00001 580 Gene3D - 341 423 IPR042197 -
Vium4423g00001 580 Pfam NB-ARC domain 191 406 IPR002182 GO:0043531
Vium4423g00001 580 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 156 IPR035897 -
Vium4423g00001 580 ProSiteProfiles TIR domain profile. 12 179 IPR000157 GO:0007165
Vium4423g00001 580 SMART till_3 13 153 IPR000157 GO:0007165
Vium4423g00001 580 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 436 IPR027417 -
Vium4423g00001 580 Pfam TIR domain 13 177 IPR000157 GO:0007165
Vium4423g00001 580 SUPERFAMILY "Winged helix" DNA-binding domain 413 498 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4423g00001 Vium-Chr4423 3495 6064 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4423g00001 12 521 WRKY Transcription Factor Family AT4G12020 27.799 1.71e-45 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4423g00001 - - vum:124837950 1148.27