Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4422g00001 ATGGGAATAAGAGACTTCCATATCAGGCTTAAGGCATTCAGGGTGAAACGTTTTTTCTTTGGAAGAAGGAGAAACAAATGGAGAGGAAACAAGCCTTCATGGATGATTCCAATATCACATGGCCATCATGTGGTGGAGCATCATGTGATCAAAGGTGGTTCTGATGACTCAGAGTTTGATTCAGTTGTGATACAGAGGGAGCAGATGGATCACACAGAACTGTGGTATTTTGGAATCTTTGATGCTGTTGTTGGAGATGGAGTTACAAAGTTTGTGCAGTCCCATTTCTTTGGCAAGAAGCTCAAAGAGTGTCATATGAGGAGAAAAGGCAAAGAAACACTGAAGAGAGCTTATCTAGGTGTAAGAACAAAGATCAGAGAGGCACTGAAGCCAGAAGAGGAGATATGCAGAATAGGTTCAACATCAGTGATGGTGATAAATGGAGAAAAGCTAGTGATAGCCAACATGGGAGATTACAGAACTGTTTTGTGCAGAAATGGTGTCGCTTATCAGACAACTGGCAGACACAGTCATTCAGCCAAGAGAAATTGGTATAGCAGACTCTTTTCAGTACGCATGATAGCTTGTGAATCAGGCAACACAACAGGTACAAAGCATTCTAAAGGCTCAGAACTTGTGGTGGGAGGTGATAGAATCGACTGTGATACTGAATTTTTGATCCTTGCAAGCAGTGGCATATGGGAGGTGATGAAGAACCAAGAGGCTGTGAGTCTCATAAGACACATAGAAGATCCACAAGAAGCAGCTGAGTGCTTGGCAAAGGAAGCTTTGATCAGGATGAGCAGAAGCAAAATTTCATGCTTAGTCATTCGCTTTGACTGA 843 0.4247 MGIRDFHIRLKAFRVKRFFFGRRRNKWRGNKPSWMIPISHGHHVVEHHVIKGGSDDSEFDSVVIQREQMDHTELWYFGIFDAVVGDGVTKFVQSHFFGKKLKECHMRRKGKETLKRAYLGVRTKIREALKPEEEICRIGSTSVMVINGEKLVIANMGDYRTVLCRNGVAYQTTGRHSHSAKRNWYSRLFSVRMIACESGNTTGTKHSKGSELVVGGDRIDCDTEFLILASSGIWEVMKNQEAVSLIRHIEDPQEAAECLAKEALIRMSRSKISCLVIRFD 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4422g00001 280 PANTHER PROTEIN PHOSPHATASE 60 279 IPR015655 GO:0004722|GO:0006470
Vium4422g00001 280 ProSiteProfiles PPM-type phosphatase domain profile. 56 279 IPR001932 -
Vium4422g00001 280 SUPERFAMILY PP2C-like 58 280 IPR036457 -
Vium4422g00001 280 SMART PP2C_4 32 277 IPR001932 -
Vium4422g00001 280 Pfam Protein phosphatase 2C 73 178 IPR001932 -
Vium4422g00001 280 Pfam Protein phosphatase 2C 219 270 IPR001932 -
Vium4422g00001 280 CDD PP2Cc 60 279 IPR001932 -
Vium4422g00001 280 Gene3D - 45 280 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4422g00001 Vium-Chr4422 3583 6751 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4422g00001 1 279 PP2C-type Phosphatase Gene Family AT3G23360 45.390 3.05e-77 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4422g00001 K19704 - gmx:100794054 491.886