Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium440g00011 ATGTTTAAGAATTTGCAGAAGCAGAATCAGAGAGAGAGAGAGAAAGAAATGGTGAAAATTTCAGTTGGTGGGTATGATGACGGAGAAGGACCCAGCAACCGCAACCAGAAGCGACGAAGGGAAGAGGAGGAGGAAGAAGAAGAAGAAGAACGAAGCACGCAACGAAGCTTTGAAATTGTTGACCGTTCAATTGAACTTCAAGAGCGTGAAGATCATCATCCTGCTCCACCCCAACGGGCTACCCCAAATGGGTCTGCAAGCAATGCCACCAGAGTTAGGTCCATTCCAATCTTCGTTTCAGACCCTGATGTCCTCGATTGCTGCATTTGCTATGAACCCTTGAGTGCTCCTGTCTTCCAGTGTGAGAATGGACACATTGCTTGCTCTAATTGCTGTGTCAGACTCAAGAACAAGTGTCCCATGTGTTTGATGCCCATTGGGTATAACCGTTGTCGGGCTATTGAGAAGGTGTTGGACTCTATTAAAATGTCGTGTCCGAATGCAAATTATGGATGCACAGAAACGTTTTGTTACAGCAAGAAAAACGATCATGAGAAGGAATGCATCTATCTGCCATGTCTATGCCCACATAGTGGTTGTGATTTTGTTGCCTCGTCCAAGGAGTTATTCCTCCACGTCAGCCACAGACATGTAGACTCTGGAACACTGTTTACATATGATAAATTTTTCACAGTCATCTTCAGTGCTGATCAGAAAACAATTGTTCTTCAAGAGAAAAATGATGGTAATCTGTTTATTGTTCACAATAACCATGAGCAGCTGGGACATAAAGTCCGCATTAGTTGCATCGGCCCCAAGTCCACGGGAGAGTTTCAGTATGAAGTTCTGGCTAGGTTTCGAGGAAGCAGTCTAATACTGCAATCTTTTACCAAGATCATTCAAGGTCAATATGCTGATCCTCCTTCAAACGCGTTCCTTTTGATTCCTTCTGGGTTTTTTGGCCCTCTACAACTGAAACTAGACATTCGCATTAAGTCACATTAA 1005 0.4368 MFKNLQKQNQREREKEMVKISVGGYDDGEGPSNRNQKRRREEEEEEEEEERSTQRSFEIVDRSIELQEREDHHPAPPQRATPNGSASNATRVRSIPIFVSDPDVLDCCICYEPLSAPVFQCENGHIACSNCCVRLKNKCPMCLMPIGYNRCRAIEKVLDSIKMSCPNANYGCTETFCYSKKNDHEKECIYLPCLCPHSGCDFVASSKELFLHVSHRHVDSGTLFTYDKFFTVIFSADQKTIVLQEKNDGNLFIVHNNHEQLGHKVRISCIGPKSTGEFQYEVLARFRGSSLILQSFTKIIQGQYADPPSNAFLLIPSGFFGPLQLKLDIRIKSH 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium440g00011 334 Pfam Seven in absentia protein family 150 264 IPR018121 GO:0005737|GO:0006511|GO:0007275
Vium440g00011 334 MobiDBLite consensus disorder prediction 52 76 - -
Vium440g00011 334 ProSiteProfiles Zinc finger SIAH-type profile. 160 218 IPR013010 GO:0008270
Vium440g00011 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 213 IPR013083 -
Vium440g00011 334 MobiDBLite consensus disorder prediction 1 22 - -
Vium440g00011 334 SUPERFAMILY RING/U-box 106 148 - -
Vium440g00011 334 SUPERFAMILY TRAF domain-like 160 331 - -
Vium440g00011 334 ProSiteProfiles Zinc finger RING-type profile. 107 142 IPR001841 -
Vium440g00011 334 Coils Coil 32 53 - -
Vium440g00011 334 CDD RING-HC_SIAHs 105 142 - -
Vium440g00011 334 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 44 333 IPR044286 -
Vium440g00011 334 MobiDBLite consensus disorder prediction 1 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium440g00011 Vium-Chr440 101878 103817 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium440g00011 45 262 C3H Transcription Factor Family AT2G41980 28.571 2.21e-20 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium440g00011 K04506 - gmx:100778869 499.204