Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium440g00010 ATGTTTAAGAATTTGCAGAAGCAGAATCAGAGAGAGAGAGAGAAAGAAATGGTGAAAATTTCAGTTGGTGGGTATGATGACGGAGAAGGACCCAGCAACCGCAACCAGAAGCGACGAAGGGAAGAGGAGGAGGAAGAAGAAGAAGAAGAACGAAGCACGCAACGAAGCTTTGAAATTGTTGACCGTTCAATTGAACTTCAAGAGCGTGAAGATCATCATCCTGCTCCACCCCAACGGGCTACCCCAAATGGGTCTGCAAGCAATGCCACCAGAGTTAGGTCCATTCCAATCTTCGTTTCAGACCCTGATGTCCTCGATTGCTGCATTTGCTATGAACCCTTGAGTGCTCCTGTCTTCCAGTGTGAGAATGGACACATTGCTTGCTCTAATTGCTGTGTCAGACTCAAGAACAAGTGTCCCATGTGTTTGATGCCCATTGGGTATAACCGTTGTCGGGCTATTGAGAAGGTGTTGGACTCTATTAAAATGTCGTGTCCGAATGCAAATTATGGATGCACAGAAACGTTTTGTTACAGCAAGAAAAACGATCATGAGAAGGAATGCATCTATCTGCCATGTCTATGCCCACATAGTGGTTGTGATTTTGTTGCCTCGTCCAAGGAGTTATTCCTCCACGTCAGCCACAGACATGAGAAAAATGATGGTAATCTGTTTATTGTTCACAATAACCATGAGCAGCTGGGACATAAAGTCCGCATTAGTTGCATCGGCCCCAAGTCCACGGGAGAGTTTCAGTATGAAGTTCTGGCTAGGTTTCGAGGAAGCAGTCTAATACTGCAATCTTTTACCAAGATCATTCAAGGTCAATATGCTGATCCTCCTTCAAACGCGTTCCTTTTGATTCCTTCTGGGTTTTTTGGCCCTCTACAACTGAAACTAGACATTCGCATTAAGTCACATTAA 924 0.4459 MFKNLQKQNQREREKEMVKISVGGYDDGEGPSNRNQKRRREEEEEEEEEERSTQRSFEIVDRSIELQEREDHHPAPPQRATPNGSASNATRVRSIPIFVSDPDVLDCCICYEPLSAPVFQCENGHIACSNCCVRLKNKCPMCLMPIGYNRCRAIEKVLDSIKMSCPNANYGCTETFCYSKKNDHEKECIYLPCLCPHSGCDFVASSKELFLHVSHRHEKNDGNLFIVHNNHEQLGHKVRISCIGPKSTGEFQYEVLARFRGSSLILQSFTKIIQGQYADPPSNAFLLIPSGFFGPLQLKLDIRIKSH 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium440g00010 307 MobiDBLite consensus disorder prediction 52 76 - -
Vium440g00010 307 SUPERFAMILY TRAF domain-like 160 304 - -
Vium440g00010 307 MobiDBLite consensus disorder prediction 1 22 - -
Vium440g00010 307 Pfam Seven in absentia protein family 150 234 IPR018121 GO:0005737|GO:0006511|GO:0007275
Vium440g00010 307 ProSiteProfiles Zinc finger SIAH-type profile. 160 218 IPR013010 GO:0008270
Vium440g00010 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 213 IPR013083 -
Vium440g00010 307 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 217 306 IPR044286 -
Vium440g00010 307 ProSiteProfiles Zinc finger RING-type profile. 107 142 IPR001841 -
Vium440g00010 307 Coils Coil 32 53 - -
Vium440g00010 307 SUPERFAMILY RING/U-box 106 149 - -
Vium440g00010 307 CDD RING-HC_SIAHs 105 142 - -
Vium440g00010 307 MobiDBLite consensus disorder prediction 1 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium440g00010 Vium-Chr440 101877 103817 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium440g00010 45 225 C3H Transcription Factor Family AT2G41980 30.270 1.82e-20 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium440g00010 K04506 - gmx:100778869 450.284